Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.6e-74 282.7 149 100.0
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 9.8e-64 246.9 149 85.9
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.3e-63 246.5 149 86.6
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 1.7e-63 246.1 150 86.7
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 1.7e-63 246.1 148 85.1
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 8.3e-63 243.8 150 88.7
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 4.5e-61 238.0 149 82.6
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 7.8e-61 237.3 149 84.6
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 7.8e-61 237.3 149 84.6
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 3.8e-60 235.0 149 83.9
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 5.0e-60 234.6 149 84.6
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.5e-59 233.0 139 86.3
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.5e-59 233.0 149 81.9
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 2.5e-59 232.3 145 84.8
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 3.3e-59 231.9 149 81.9
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 3.3e-59 231.9 144 83.3
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 3.3e-59 231.9 149 81.9
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 4.3e-59 231.5 149 81.9
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 4.3e-59 231.5 149 81.9
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 4.3e-59 231.5 149 79.9
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 5.6e-59 231.1 147 83.7
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 5.6e-59 231.1 145 82.8
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 7.3e-59 230.7 149 82.6
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 9.5e-59 230.3 139 86.3
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.2e-58 229.9 149 81.2
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.2e-58 229.9 145 84.1
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.2e-58 229.9 139 85.6
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 1.6e-58 229.6 149 81.2
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.6e-58 229.6 149 81.2
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.6e-58 229.6 139 85.6
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.1e-58 229.2 149 80.5
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.1e-58 229.2 144 82.6
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 2.1e-58 229.2 148 81.1
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 2.8e-58 228.8 149 82.6
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 2.8e-58 228.8 147 80.3
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 2.8e-58 228.8 147 80.3
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 3.6e-58 228.4 149 82.6
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 3.6e-58 228.4 149 82.6
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 3.6e-58 228.4 145 82.1
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 3.6e-58 228.4 144 80.6
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 4.7e-58 228.0 139 84.2
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 4.7e-58 228.0 139 84.2
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.0e-57 226.9 139 83.5
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.0e-57 226.9 147 83.0
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 1.8e-57 226.1 145 83.4
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.8e-57 226.1 149 79.2
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.8e-57 226.1 148 78.4
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 1.8e-57 226.1 137 83.9
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 2.3e-57 225.7 149 81.2
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 2.3e-57 225.7 146 82.2
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 2.3e-57 225.7 143 80.4
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 4.0e-57 224.9 147 81.6
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 5.2e-57 224.6 149 79.2
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 8.9e-57 223.8 149 79.2
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 8.9e-57 223.8 148 78.4
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 8.9e-57 223.8 149 78.5
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 1.2e-56 223.4 148 80.4
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.2e-56 223.4 139 84.9
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.5e-56 223.0 147 78.2
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.5e-56 223.0 147 81.0
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 1.5e-56 223.0 139 82.7
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.5e-56 223.0 139 82.7
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.5e-56 223.0 139 82.0
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.5e-56 223.0 139 81.3
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 1.5e-56 223.0 139 82.7
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 3.4e-56 221.9 148 79.7
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 4.4e-56 221.5 148 79.7
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 4.4e-56 221.5 149 77.9
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 5.7e-56 221.1 139 83.5
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 5.7e-56 221.1 139 83.5
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 5.7e-56 221.1 143 78.3
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 7.5e-56 220.7 148 79.7
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 9.8e-56 220.3 148 75.7
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 9.8e-56 220.3 149 77.2
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.3e-55 219.9 144 77.8
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 1.7e-55 219.5 145 75.9
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.7e-55 219.5 147 77.6
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 4.9e-55 218.0 149 78.5
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 6.4e-55 217.6 135 80.7
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 6.4e-55 217.6 138 81.2
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 8.3e-55 217.2 139 82.7
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 8.3e-55 217.2 142 78.9
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 8.3e-55 217.2 148 75.7
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 8.3e-55 217.2 144 77.8
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.4e-54 216.5 141 78.7
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.4e-54 216.5 144 77.8
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.8e-54 216.1 144 77.8
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 3.2e-54 215.3 149 77.2
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 7.0e-54 214.2 146 75.3
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 9.2e-54 213.8 144 74.3
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 1.2e-53 213.4 145 73.8
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 1.2e-53 213.4 144 75.0
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 1.6e-53 213.0 145 77.9
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.0e-52 210.3 149 73.8
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 1.0e-52 210.3 135 80.0
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.7e-52 209.5 149 72.5
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 5.0e-52 208.0 147 73.5
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 1.5e-51 206.5 148 75.0
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.5e-51 206.5 149 71.1
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 3.3e-51 205.3 148 75.0
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 3.3e-51 205.3 145 73.8
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 4.3e-51 204.9 138 75.4
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 4.3e-51 204.9 139 77.7
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 5.6e-51 204.5 138 75.4
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 1.8e-49 199.5 144 72.9
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 6.8e-49 197.6 149 69.8
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 8.9e-49 197.2 125 83.2
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.9e-47 192.2 139 72.7
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 1.4e-46 189.9 139 69.8
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-46 189.9 140 72.1
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 1.4e-46 189.9 139 71.2
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 2.4e-46 189.1 141 71.6
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 3.2e-46 188.7 142 71.1
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 4.1e-46 188.3 140 71.4
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 4.1e-46 188.3 117 79.5
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 2.0e-45 186.0 136 69.9
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 6.0e-45 184.5 138 70.3
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 6.0e-45 184.5 138 70.3
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 6.0e-45 184.5 138 70.3
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 7.8e-45 184.1 137 67.2
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 2.3e-44 182.6 139 66.2
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 3.0e-44 182.2 144 68.1
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 3.0e-44 182.2 138 68.1
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 6.6e-44 181.0 133 69.9
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 6.6e-44 181.0 145 64.1
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 1.5e-43 179.9 139 68.3
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 4.3e-43 178.3 139 69.8
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 4.3e-43 178.3 120 78.3
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 7.3e-43 177.6 143 62.9
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 1.2e-42 176.8 139 69.8
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 5.2e-41 171.4 138 67.4
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 5.2e-41 171.4 138 67.4
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 1.9e-38 162.9 145 57.9
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 4.1e-38 161.8 139 63.3
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 6.0e-37 157.9 135 59.3
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.3e-36 156.8 132 63.6
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 3.6e-34 148.7 133 60.9
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 5.2e-33 144.8 125 57.6
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.3e-31 140.2 131 60.3
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.2e-26 123.6 90 73.3
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 9.0e-25 117.5 109 60.6
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 1.2e-21 107.1 95 63.2
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 2.1e-21 106.3 135 39.3
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 8.7e-20 100.9 138 40.6
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 4.2e-14 82.0 87 48.3
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 6.0e-13 78.2 46 82.6


User provided reference genes

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