Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 7.0e-123 444.1 248 100.0
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 4.4e-77 292.0 238 73.9
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.6e-71 273.5 240 69.2
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 8.1e-71 271.2 237 68.8
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 6.8e-70 268.1 242 69.8
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 6.8e-70 268.1 241 70.1
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.3e-68 263.8 219 72.6
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.3e-68 263.8 243 67.9
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 3.7e-68 262.3 242 65.7
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 4.9e-68 261.9 242 66.5
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 6.4e-68 261.5 243 67.1
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 8.3e-68 261.2 245 66.5
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.1e-67 260.8 243 66.3
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 5.4e-67 258.5 238 67.2
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 5.4e-67 258.5 243 67.9
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 3.5e-66 255.8 238 66.0
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 3.0e-65 252.7 240 64.6
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 6.6e-65 251.5 239 63.2
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 8.6e-65 251.1 242 66.5
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 8.6e-65 251.1 237 67.1
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 7.3e-64 248.1 250 61.6
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 2.8e-63 246.1 243 65.4
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 1.4e-62 243.8 247 62.3
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 2.4e-62 243.0 238 60.1
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 6.8e-62 241.5 247 62.3
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.2e-61 240.7 244 67.6
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 2.6e-61 239.6 240 61.7
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 4.4e-61 238.8 250 60.8
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 2.2e-60 236.5 244 60.2
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 3.2e-59 232.6 244 57.0
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.6e-58 230.3 254 60.2
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 3.5e-58 229.2 243 62.6
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 7.8e-58 228.0 242 58.3
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 2.3e-57 226.5 240 59.6
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 5.1e-57 225.3 242 60.3
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 6.6e-57 224.9 240 57.5
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 3.3e-56 222.6 234 59.8
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 9.6e-56 221.1 259 55.2
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.1e-55 219.9 241 56.8
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 2.8e-55 219.5 245 60.0
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 4.7e-55 218.8 241 54.8
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 8.1e-55 218.0 258 57.4
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 1.1e-54 217.6 253 59.3
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.4e-54 217.2 238 62.6
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 2.4e-54 216.5 241 56.0
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 3.1e-54 216.1 262 58.8
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.0e-54 215.7 228 58.3
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 1.5e-53 213.8 230 63.0
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 1.5e-53 213.8 269 55.8
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 3.4e-53 212.6 236 59.7
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 9.9e-53 211.1 234 62.0
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 1.3e-52 210.7 281 53.4
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.3e-52 210.7 247 56.3
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 1.3e-52 210.7 235 57.4
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 4.9e-52 208.8 254 57.1
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 4.9e-52 208.8 255 57.6
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 6.4e-52 208.4 267 54.7
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 6.4e-52 208.4 239 56.9
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 1.1e-51 207.6 239 55.2
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 1.9e-51 206.8 239 56.5
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.4e-51 206.5 251 56.6
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 2.4e-51 206.5 254 57.1
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 3.2e-51 206.1 251 56.2
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 4.2e-51 205.7 238 56.3
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 1.6e-50 203.8 251 55.8
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 6.0e-50 201.8 235 61.7
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 6.0e-50 201.8 243 55.6
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.0e-49 201.1 231 55.8
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 3.9e-49 199.1 227 57.3
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 5.1e-49 198.7 285 50.9
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 2.5e-48 196.4 252 52.8
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 3.3e-48 196.1 227 56.4
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.6e-47 193.7 263 52.1
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 4.8e-47 192.2 248 52.4
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 1.8e-46 190.3 150 62.7
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 2.2e-44 183.3 247 50.2
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 2.9e-44 183.0 244 45.9
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 8.4e-44 181.4 242 55.8
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.1e-43 181.0 241 51.0
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.1e-43 181.0 171 66.1
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 1.9e-43 180.3 243 50.6
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 7.1e-43 178.3 242 50.4
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 7.1e-43 178.3 221 57.5
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 7.9e-42 174.9 238 47.5
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 6.7e-41 171.8 232 52.6
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 3.3e-40 169.5 245 49.0
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 3.3e-40 169.5 242 44.6
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 3.3e-40 169.5 284 49.3
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 9.6e-40 167.9 230 55.2
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 9.6e-40 167.9 248 47.6
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 1.6e-39 167.2 232 50.9
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 4.8e-39 165.6 240 52.1
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 4.8e-39 165.6 262 49.2
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 4.8e-39 165.6 234 44.0
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 8.1e-39 164.9 224 50.4
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.8e-38 163.7 245 46.1
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 4.0e-38 162.5 243 47.3
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 9.0e-38 161.4 247 55.1
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 9.0e-38 161.4 231 48.9
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 9.0e-38 161.4 231 48.9
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 1.2e-37 161.0 231 46.3
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 1.2e-37 161.0 227 48.9
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.0e-37 160.2 255 49.8
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 2.6e-37 159.8 227 48.5
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 2.2e-36 156.8 168 53.0
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.9e-36 156.4 149 56.4
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.9e-36 156.4 255 48.6
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 3.8e-36 156.0 248 48.8
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 2.1e-34 150.2 280 41.4
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 7.9e-34 148.3 252 46.4
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 1.8e-33 147.1 243 42.4
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 1.8e-33 147.1 236 46.2
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 3.0e-33 146.4 247 42.1
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 3.9e-33 146.0 245 42.0
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 7.4e-32 141.7 272 46.3
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 1.3e-31 141.0 268 45.9
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 2.1e-31 140.2 251 45.8
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 2.8e-31 139.8 257 44.0
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 4.8e-31 139.0 232 45.7
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 4.8e-31 139.0 264 44.7
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 2.4e-30 136.7 252 45.2
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 4.0e-30 136.0 273 45.1
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 9.0e-30 134.8 276 44.6
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 9.0e-30 134.8 276 44.6
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 9.0e-30 134.8 171 50.3
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 2.6e-29 133.3 278 43.9
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 2.6e-29 133.3 278 43.9
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.6e-29 133.3 278 43.5
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 1.2e-26 124.4 249 45.0
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 4.6e-26 122.5 262 42.4
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 6.1e-26 122.1 252 44.4
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 3.9e-25 119.4 202 46.0
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 5.1e-25 119.0 152 47.4
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 2.2e-23 113.6 169 45.0
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 3.7e-23 112.8 247 35.6
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 4.8e-23 112.5 162 44.4
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.8e-22 110.5 251 45.0
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.3e-20 104.4 101 54.5
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 1.4e-19 100.9 231 35.5
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.6e-18 97.4 103 51.5
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 4.8e-15 85.9 152 38.8
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 2.2e-12 77.0 87 60.9
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.4e-09 67.8 130 36.9
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 1.1e-08 64.7 99 39.4
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 7.4e-08 62.0 133 36.1
MSTRG.7055 Avicennia marina HOM05D003370 ORTHO05D003848 9.7e-08 61.6 155 34.2
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 2.8e-07 60.1 130 35.4
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 6.3e-07 58.9 130 36.2
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 8.2e-07 58.5 130 36.2
ClCG07G010650 Citrullus lanatus HOM05D003370 ORTHO05D003848 1.1e-06 58.2 142 35.9
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 1.1e-06 58.2 137 35.0
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.4e-06 57.8 51 58.8
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 1.8e-06 57.4 130 36.2
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 2.4e-06 57.0 130 35.4
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 3.1e-06 56.6 130 34.6
Nn7g37824 Nelumbo nucifera HOM05D003370 ORTHO05D003848 4.1e-06 56.2 138 35.5
Nn7g37825 Nelumbo nucifera HOM05D003370 ORTHO05D003848 4.1e-06 56.2 138 35.5
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 4.1e-06 56.2 131 37.4
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 5.3e-06 55.8 133 36.8
TAR627G0521 Trochodendron aralioides HOM05D003370 ORTHO05D003848 5.3e-06 55.8 135 34.8
TAR629G0110 Trochodendron aralioides HOM05D003370 ORTHO05D003848 7.0e-06 55.5 135 32.6


User provided reference genes

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