Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.7e-89 332.0 172 100.0
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.4e-84 314.7 172 94.8
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 2.1e-70 269.2 174 79.9
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 1.0e-64 250.4 172 76.2
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 2.1e-62 242.7 174 73.0
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 2.1e-62 242.7 183 71.6
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 4.7e-62 241.5 175 74.9
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 8.1e-62 240.7 168 72.6
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 1.1e-58 230.3 182 68.1
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 2.4e-58 229.2 168 69.0
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 3.2e-58 228.8 172 70.9
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 3.2e-58 228.8 168 71.4
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 5.4e-58 228.0 171 72.5
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 9.3e-58 227.3 168 68.5
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 1.2e-57 226.9 178 68.5
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 3.5e-57 225.3 171 70.2
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 1.0e-56 223.8 170 66.5
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 1.3e-56 223.4 178 67.4
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.7e-56 223.0 166 69.9
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 1.7e-56 223.0 172 69.2
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 2.3e-56 222.6 172 69.2
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 3.9e-56 221.9 173 66.5
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 5.1e-56 221.5 178 67.4
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 6.6e-56 221.1 168 67.3
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 8.7e-56 220.7 166 71.1
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 5.6e-55 218.0 173 65.9
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 5.6e-55 218.0 165 68.5
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 9.6e-55 217.2 172 65.7
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 9.6e-55 217.2 178 66.3
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 2.8e-54 215.7 168 64.9
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.8e-54 215.7 171 65.5
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 8.1e-54 214.2 176 63.6
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 8.1e-54 214.2 175 63.4
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 3.1e-53 212.2 168 66.7
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 5.3e-53 211.5 185 62.7
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 5.3e-53 211.5 179 64.2
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 9.0e-53 210.7 176 63.6
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.3e-51 206.8 176 63.6
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.2e-51 206.1 171 62.6
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 2.2e-51 206.1 171 62.6
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 4.9e-51 204.9 172 61.6
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 6.4e-51 204.5 172 64.5
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 1.1e-50 203.8 172 64.5
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 9.3e-50 200.7 165 61.2
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 1.2e-49 200.3 177 62.1
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 1.6e-49 199.9 170 64.1
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 4.6e-49 198.4 167 60.5
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 4.6e-49 198.4 168 64.3
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 7.9e-49 197.6 104 96.2
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 3.9e-48 195.3 175 59.4
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 8.7e-48 194.1 173 60.1
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 8.7e-48 194.1 178 60.7
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 8.7e-48 194.1 179 59.8
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.1e-47 193.7 175 59.4
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.1e-47 193.7 179 59.2
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 1.1e-47 193.7 179 59.2
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 2.5e-47 192.6 174 59.2
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 3.3e-47 192.2 172 57.6
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 3.3e-47 192.2 172 57.6
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 4.3e-47 191.8 172 58.1
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 5.6e-47 191.4 173 59.0
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 5.6e-47 191.4 172 60.5
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 5.6e-47 191.4 175 59.4
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 7.4e-47 191.0 172 57.0
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 1.3e-46 190.3 171 58.5
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 1.3e-46 190.3 164 61.6
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.6e-46 189.9 170 58.8
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 2.8e-46 189.1 159 61.0
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 1.8e-45 186.4 158 62.7
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.4e-45 186.0 239 47.7
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 3.1e-45 185.7 178 57.3
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 4.0e-45 185.3 170 62.9
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 5.3e-45 184.9 170 56.5
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 6.9e-45 184.5 168 63.1
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 9.0e-45 184.1 168 58.9
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.0e-44 183.0 168 57.1
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 2.6e-44 182.6 177 58.2
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 3.4e-44 182.2 169 57.4
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 5.8e-44 181.4 168 58.9
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 9.9e-44 180.6 173 56.1
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 2.2e-43 179.5 171 59.1
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 4.9e-43 178.3 168 55.4
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 6.4e-43 177.9 132 70.5
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 1.9e-42 176.4 168 57.1
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 7.1e-42 174.5 172 55.8
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 6.0e-41 171.4 112 77.7
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 6.0e-41 171.4 135 65.9
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 3.0e-40 169.1 163 52.8
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 3.9e-40 168.7 164 57.3
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 3.9e-40 168.7 124 66.9
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 6.7e-40 167.9 165 54.5
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 6.7e-40 167.9 166 54.8
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 6.7e-40 167.9 168 57.1
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 8.7e-40 167.5 170 55.3
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 5.6e-39 164.9 151 58.3
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.6e-38 163.3 172 52.9
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 3.7e-38 162.2 175 51.4
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 4.8e-38 161.8 182 52.7
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 8.2e-38 161.0 134 59.0
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 1.1e-37 160.6 173 52.6
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.1e-37 160.6 165 50.9
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 3.1e-37 159.1 165 51.5
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 4.0e-37 158.7 187 50.8
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 4.0e-37 158.7 136 60.3
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 6.9e-37 157.9 121 67.8
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 4.5e-36 155.2 160 51.2
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 7.6e-36 154.5 164 54.9
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.0e-35 154.1 187 52.9
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 8.4e-35 151.0 158 53.2
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 1.1e-34 150.6 172 50.6
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.1e-34 150.6 168 50.6
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 1.9e-34 149.8 133 57.1
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 1.9e-34 149.8 156 53.8
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 7.1e-34 147.9 106 70.8
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 7.1e-34 147.9 165 47.3
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 1.6e-33 146.7 176 51.1
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 6.0e-33 144.8 133 57.9
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 7.9e-33 144.4 181 48.6
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.0e-32 144.1 178 48.3
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 8.2e-30 134.4 106 64.2
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.4e-29 133.7 168 48.2
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 2.9e-27 125.9 175 41.7
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 6.5e-27 124.8 80 77.5
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.4e-26 123.6 127 55.9
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 1.6e-25 120.2 106 58.5
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 1.6e-25 120.2 106 58.5
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 2.3e-24 116.3 188 39.9
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 2.5e-23 112.8 115 57.4
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 3.3e-23 112.5 76 75.0
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 6.9e-21 104.8 106 58.5
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 8.5e-19 97.8 164 36.6
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 9.7e-15 84.3 97 48.5
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 1.3e-14 84.0 104 47.1
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 1.3e-14 84.0 104 47.1
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 8.5e-11 71.2 62 53.2
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 1.4e-10 70.5 90 41.1
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 1.2e-09 67.4 110 32.7
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 8.0e-09 64.7 133 36.8
Actinidia31636 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.0e-08 64.3 87 46.0
Zm00001eb290470 Zea mays HOM05D004876 ORTHO05D005488 8.2e-06 54.7 60 43.3


User provided reference genes

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