Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 4.4e-192 674.5 349 100.0
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.1e-161 573.5 325 85.8
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 1.5e-160 569.7 324 86.7
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 2.0e-160 569.3 323 85.1
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 7.7e-160 567.4 323 84.8
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 2.2e-159 565.8 349 80.5
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 2.2e-159 565.8 327 84.4
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 1.9e-158 562.8 326 83.7
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 2.5e-158 562.4 402 72.9
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 4.2e-158 561.6 326 84.0
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.6e-157 559.7 325 84.6
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 3.6e-157 558.5 324 82.4
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 3.6e-157 558.5 326 85.0
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 7.9e-157 557.4 325 83.4
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 7.9e-157 557.4 349 83.4
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 2.3e-156 555.8 324 81.8
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.5e-155 553.1 325 83.4
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 2.0e-155 552.7 344 80.5
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.6e-155 552.4 325 83.4
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 5.7e-155 551.2 326 82.8
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 7.4e-155 550.8 324 81.2
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 7.4e-155 550.8 319 85.9
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 9.7e-155 550.4 327 82.3
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 2.8e-154 548.9 350 83.7
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 3.1e-153 545.4 332 81.6
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 6.9e-153 544.3 344 81.1
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 9.1e-153 543.9 336 79.8
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 1.2e-152 543.5 325 81.5
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.5e-152 543.1 327 82.0
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.0e-152 542.7 349 76.8
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 2.6e-152 542.3 322 83.9
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.7e-151 539.7 327 82.3
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 2.9e-151 538.9 341 78.9
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 8.5e-151 537.3 325 81.2
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 8.5e-151 537.3 327 79.2
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 1.1e-150 537.0 308 86.7
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 3.2e-150 535.4 327 81.3
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 4.2e-150 535.0 328 79.0
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 9.4e-150 533.9 308 84.1
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 1.6e-149 533.1 326 81.0
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.6e-149 533.1 326 81.0
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 2.1e-149 532.7 326 78.8
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 2.7e-149 532.3 326 80.1
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.6e-149 531.9 345 78.6
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 3.6e-149 531.9 326 81.3
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 3.6e-149 531.9 327 78.9
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 4.7e-149 531.6 329 78.4
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 4.7e-149 531.6 326 80.7
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 7.9e-149 530.8 305 85.6
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.8e-148 529.6 327 78.6
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 1.8e-148 529.6 326 78.5
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 3.0e-148 528.9 326 78.5
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 3.9e-148 528.5 337 77.2
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 3.9e-148 528.5 327 78.6
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 6.7e-148 527.7 328 78.0
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 6.7e-148 527.7 326 80.1
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 4.4e-147 525.0 327 78.3
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 5.7e-147 524.6 327 78.3
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 7.4e-147 524.2 328 79.9
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 7.4e-147 524.2 327 79.5
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 4.8e-146 521.5 325 80.6
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 4.8e-146 521.5 324 79.3
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 4.8e-146 521.5 333 78.1
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 6.3e-146 521.2 333 77.8
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 8.2e-146 520.8 329 79.0
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.1e-145 520.4 350 76.9
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 7.0e-145 517.7 333 77.2
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 7.0e-145 517.7 330 78.8
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 9.1e-145 517.3 327 76.8
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 9.1e-145 517.3 308 82.1
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 2.0e-144 516.2 308 81.8
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 2.6e-144 515.8 326 77.3
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 2.6e-144 515.8 327 76.8
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 3.5e-144 515.4 367 71.4
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 1.0e-143 513.8 302 82.5
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 1.3e-143 513.5 328 76.2
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 2.9e-143 512.3 327 76.5
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 5.0e-143 511.5 318 78.6
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 1.1e-142 510.4 328 75.9
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.5e-142 509.2 335 76.4
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.5e-142 509.2 335 76.4
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.2e-141 506.9 327 76.8
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 1.6e-141 506.5 335 75.5
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 2.3e-140 502.7 327 76.5
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 4.0e-140 501.9 328 77.4
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 2.0e-139 499.6 326 73.3
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 5.7e-139 498.0 291 82.5
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 7.5e-139 497.7 284 84.2
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 1.3e-138 496.9 312 76.3
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 2.2e-138 496.1 311 78.5
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 2.8e-138 495.7 324 75.3
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 4.8e-138 495.0 268 88.1
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 8.2e-138 494.2 313 78.0
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.1e-137 493.8 327 75.5
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.8e-137 493.0 326 75.8
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 1.6e-136 490.0 327 76.1
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 2.2e-135 486.1 331 75.2
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 6.5e-135 484.6 309 77.0
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 1.4e-132 476.9 300 76.0
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 5.2e-132 474.9 318 77.0
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 2.0e-131 473.0 272 83.5
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 2.0e-131 473.0 338 69.2
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.1e-129 467.2 270 83.7
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.2e-127 459.5 342 70.5
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 5.0e-127 458.4 326 70.9
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 3.2e-126 455.7 280 81.8
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 3.6e-125 452.2 294 76.2
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 9.2e-121 437.6 315 72.7
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 3.5e-120 435.6 301 75.4
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 1.1e-118 430.6 304 67.4
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 5.6e-118 428.3 282 82.3
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 2.8e-117 426.0 329 62.6
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 8.0e-117 424.5 279 77.1
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 4.0e-116 422.2 290 71.7
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 4.1e-113 412.1 260 78.8
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.6e-112 410.2 272 70.2
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 1.4e-108 397.1 255 78.4
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 2.2e-106 389.8 282 73.0
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.9e-95 352.4 311 61.7
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 2.3e-92 343.2 228 75.4
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 2.0e-91 340.1 219 78.5
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 2.6e-91 339.7 242 77.7
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 2.2e-66 256.9 153 77.1
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 8.4e-66 255.0 326 48.2
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.0e-63 246.5 139 82.0
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 5.1e-63 245.7 170 74.7
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.6e-61 240.7 147 80.3
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.9e-54 217.2 150 76.0
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 5.7e-54 215.7 132 74.2
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.9e-49 200.7 108 83.3
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 3.6e-48 196.4 108 81.5
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 3.0e-39 166.8 277 42.6
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 4.1e-36 156.4 129 58.1
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 9.1e-36 155.2 112 67.9
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 4.2e-33 146.4 308 33.4
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 3.3e-30 136.7 117 59.8
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 7.7e-27 125.6 124 55.6
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 6.1e-24 115.9 88 63.6
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 2.3e-23 114.0 86 64.0
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 2.2e-21 107.5 285 31.2
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.2e-19 101.7 64 73.4
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 4.5e-19 99.8 92 59.8
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 7.7e-19 99.0 93 60.2
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 1.1e-17 95.1 53 88.7
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 9.4e-17 92.0 52 80.8
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 9.4e-17 92.0 53 75.5
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 1.2e-16 91.7 81 51.9
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 1.4e-15 88.2 51 78.4
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 7.0e-12 75.9 57 63.2
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.0e-10 72.0 40 77.5
Cc04_g14790 Coffea canephora HOM05D004860 ORTHO05D006366 8.9e-07 58.9 29 79.3
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.6e-06 57.4 31 83.9


User provided reference genes

Program Settings