Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G088300 Carya illinoinensis HOM05D007734 ORTHO05D009807 8.9e-54 213.4 110 100.0
CiPaw.01G155700 Carya illinoinensis HOM05D007734 ORTHO05D009807 3.7e-36 154.8 94 86.2
ClCG06G005560 Citrullus lanatus HOM05D007734 ORTHO05D009807 6.0e-34 147.5 91 78.0
CsaV3_6G005600 Cucumis sativus L. HOM05D007734 ORTHO05D009807 1.0e-33 146.7 91 76.9
MD13G1176100 Malus domestica HOM05D007734 ORTHO05D009807 5.0e-33 144.4 94 75.5
CANSAT78G1562 Cannabis sativa HOM05D007734 ORTHO05D009807 6.6e-33 144.1 91 74.7
MELO3C021378.2 Cucumis melo HOM05D007734 ORTHO05D009807 8.6e-33 143.7 91 75.8
QL06p006592 Quercus lobata HOM05D007734 ORTHO05D009807 8.6e-33 143.7 91 82.4
Prupe.1G145200 Prunus persica HOM05D007734 ORTHO05D009807 2.5e-32 142.1 94 75.5
FvH4_4g16860 Fragaria vesca HOM05D007734 ORTHO05D009807 7.3e-32 140.6 94 72.3
FAN12G0936 Fragaria x ananassa HOM05D007734 ORTHO05D009807 7.3e-32 140.6 94 72.3
FAN12G2573 Fragaria x ananassa HOM05D007734 ORTHO05D009807 7.3e-32 140.6 94 72.3
GSVIVG01017837001 Vitis vinifera HOM05D007734 ORTHO05D009807 6.2e-31 137.5 91 74.7
FAN07G1074 Fragaria x ananassa HOM05D007734 ORTHO05D009807 8.1e-31 137.1 94 73.4
RcHm_v2.0_Chr4g0420431 Rosa chinensis HOM05D007734 ORTHO05D009807 8.1e-31 137.1 94 72.3
Sed0016523 Sechium edule HOM05D007734 ORTHO05D009807 8.1e-31 137.1 91 74.7
MD16G1177900 Malus domestica HOM05D007734 ORTHO05D009807 1.8e-30 136.0 94 70.2
FAN17G2648 Fragaria x ananassa HOM05D007734 ORTHO05D009807 2.3e-30 135.6 94 72.3
Cfa015520 Carpinus fangiana HOM05D007734 ORTHO05D009807 8.9e-30 133.7 91 79.1
Eucgr.H03661 Eucalyptus grandis HOM05D007734 ORTHO05D009807 1.2e-29 133.3 99 69.7
Hma1.2p1_0643F.1_g194590 Hydrangea macrophylla HOM05D007734 ORTHO05D009807 1.2e-29 133.3 81 77.8
TWI73G0877 Tripterygium wilfordii HOM05D007734 ORTHO05D009807 2.0e-29 132.5 91 72.5
Haze_01029 Corylus avellana HOM05D007734 ORTHO05D009807 3.4e-29 131.7 91 79.1
TAR365G0453 Trochodendron aralioides HOM05D007734 ORTHO05D009807 3.4e-29 131.7 91 70.3
TWI09G1295 Tripterygium wilfordii HOM05D007734 ORTHO05D009807 5.8e-29 131.0 93 71.0
Duzib151G0459 Durio zibethinus HOM05D007734 ORTHO05D009807 7.5e-29 130.6 93 72.0
Nn4g26101 Nelumbo nucifera HOM05D007734 ORTHO05D009807 7.5e-29 130.6 91 71.4
Gohir.D10G164200 Gossypium hirsutum HOM05D007734 ORTHO05D009807 9.9e-29 130.2 93 75.3
Gorai.011G183300 Gossypium raimondii HOM05D007734 ORTHO05D009807 9.9e-29 130.2 93 75.3
Sed0021110 Sechium edule HOM05D007734 ORTHO05D009807 1.3e-28 129.8 91 72.5
Gorai.006G074800 Gossypium raimondii HOM05D007734 ORTHO05D009807 1.7e-28 129.4 93 68.8
Gohir.D09G060100 Gossypium hirsutum HOM05D007734 ORTHO05D009807 2.9e-28 128.6 93 68.8
Lj4g0025137 Lotus japonicus HOM05D007734 ORTHO05D009807 2.9e-28 128.6 100 67.0
Atru.chr4.2717 Acer truncatum HOM05D007734 ORTHO05D009807 4.9e-28 127.9 89 75.3
Gohir.A10G104500 Gossypium hirsutum HOM05D007734 ORTHO05D009807 8.3e-28 127.1 93 74.2
Peaxi162Scf00095g00125 Petunia axillaris HOM05D007734 ORTHO05D009807 1.1e-27 126.7 94 67.0
Aa31LG11G10850 Aethionema arabicum HOM05D007734 ORTHO05D009807 5.4e-27 124.4 91 67.0
Duzib052G0038 Durio zibethinus HOM05D007734 ORTHO05D009807 7.1e-27 124.0 93 71.0
Glyma.07G252900 Glycine max HOM05D007734 ORTHO05D009807 9.2e-27 123.6 73 80.8
Glyma.17G021500 Glycine max HOM05D007734 ORTHO05D009807 9.2e-27 123.6 94 64.9
Gohir.A09G061200 Gossypium hirsutum HOM05D007734 ORTHO05D009807 9.2e-27 123.6 93 65.6
Thecc.04G274000 Theobroma cacao HOM05D007734 ORTHO05D009807 9.2e-27 123.6 93 67.7
arahy.Tifrunner.gnm1.ann1.80YKV9 Arachis hypogaea HOM05D007734 ORTHO05D009807 1.2e-26 123.2 93 66.7
arahy.Tifrunner.gnm1.ann1.F9B3QK Arachis hypogaea HOM05D007734 ORTHO05D009807 3.5e-26 121.7 93 66.7
MBI19_g13511_MAGBIO Magnolia biondii HOM05D007734 ORTHO05D009807 3.5e-26 121.7 91 65.9
Oeu044804.1 Olea europaea HOM05D007734 ORTHO05D009807 3.5e-26 121.7 94 64.9
Migut.G00233 Erythranthe guttata HOM05D007734 ORTHO05D009807 4.6e-26 121.3 94 68.1
CAN.G627.13 Capsicum annuum HOM05D007734 ORTHO05D009807 6.0e-26 120.9 94 64.9
Dinv44448 Davidia involucrata HOM05D007734 ORTHO05D009807 7.8e-26 120.6 91 68.1
BraA03t10238Z Brassica rapa HOM05D007734 ORTHO05D009807 1.0e-25 120.2 92 69.6
Phvul.003G099200 Phaseolus vulgaris HOM05D007734 ORTHO05D009807 1.0e-25 120.2 92 66.3
Manes.03G189200 Manihot esculenta HOM05D007734 ORTHO05D009807 1.7e-25 119.4 91 65.9
Carub.0006s1717 Capsella rubella HOM05D007734 ORTHO05D009807 2.3e-25 119.0 95 65.3
CSS0028590 Camellia sinensis var. sinensis HOM05D007734 ORTHO05D009807 3.9e-25 118.2 92 69.6
Thhalv10015120m.g Eutrema salsugineum HOM05D007734 ORTHO05D009807 3.9e-25 118.2 89 66.3
Sabra08G0163100 Salix brachista HOM05D007734 ORTHO05D009807 5.1e-25 117.9 77 70.1
BcaB01g05276 Brassica carinata HOM05D007734 ORTHO05D009807 6.6e-25 117.5 92 67.4
C03p10680 Brassica napus HOM05D007734 ORTHO05D009807 6.6e-25 117.5 92 67.4
BolC3t13544H Brassica oleracea HOM05D007734 ORTHO05D009807 6.6e-25 117.5 92 67.4
CARHR194160 Cardamine hirsuta HOM05D007734 ORTHO05D009807 6.6e-25 117.5 89 66.3
AT5G18850 Arabidopsis thaliana HOM05D007734 ORTHO05D009807 1.1e-24 116.7 90 64.4
PSO302G0168 Papaver somniferum HOM05D007734 ORTHO05D009807 1.5e-24 116.3 93 61.3
CDE05G0384 Ceratophyllum demersum HOM05D007734 ORTHO05D009807 1.9e-24 115.9 77 74.0
Ciclev10007097m.g Citrus clementina HOM05D007734 ORTHO05D009807 5.6e-24 114.4 90 64.4
Potri.008G197300 Populus trichocarpa HOM05D007734 ORTHO05D009807 5.6e-24 114.4 77 68.8
AL6G30210 Arabidopsis lyrata HOM05D007734 ORTHO05D009807 9.5e-24 113.6 90 63.3
SGA_v2.0_scaffold142G35667 Striga asiatica HOM05D007734 ORTHO05D009807 1.2e-23 113.2 98 61.2
Potri.010G026900 Populus trichocarpa HOM05D007734 ORTHO05D009807 2.8e-23 112.1 78 69.2
Sopen01g032410 Solanum pennellii HOM05D007734 ORTHO05D009807 4.7e-23 111.3 88 63.6
BcaB01g04888 Brassica carinata HOM05D007734 ORTHO05D009807 6.2e-23 110.9 92 65.2
Sp6g25520 Schrenkiella parvula HOM05D007734 ORTHO05D009807 1.1e-22 110.2 92 63.0
Solyc01g080590.3 Solanum lycopersicum HOM05D007734 ORTHO05D009807 1.1e-22 110.2 88 62.5
PGSC0003DMG400032093 Solanum tuberosum HOM05D007734 ORTHO05D009807 1.1e-22 110.2 88 63.6
Nitab4.5_0009396g0030 Nicotiana tabacum HOM05D007734 ORTHO05D009807 1.4e-22 109.8 72 72.2
Ca_30429_v3 Cicer arietinum L. HOM05D007734 ORTHO05D009807 2.4e-22 109.0 71 74.6
Cc03_g02610 Coffea canephora HOM05D007734 ORTHO05D009807 2.6e-21 105.5 91 60.4
Lalb_Chr07g0177521 Lupinus albus HOM05D007734 ORTHO05D009807 3.4e-21 105.1 69 72.5
Actinidia40206 Actinidia chinensis HOM05D007734 ORTHO05D009807 5.8e-21 104.4 91 61.5
THA.LOC104818832 Tarenaya hassleriana HOM05D002550 ORTHO05D003420 6.4e-20 100.9 74 63.5
MSTRG.3964 Avicennia marina HOM05D007734 ORTHO05D009807 8.4e-20 100.5 108 52.8
Psat4g030040 Pisum sativum HOM05D007734 ORTHO05D009807 8.4e-20 100.5 65 75.4
ATR0487G018 Amborella trichopoda HOM05D007734 ORTHO05D009807 1.4e-19 99.8 93 59.1
CDE05G0036 Ceratophyllum demersum HOM05D007734 ORTHO05D009807 4.1e-19 98.2 54 81.5
SEGI_32711 Sequoiadendron giganteum HOM05D007734 ORTHO05D009807 2.4e-14 82.4 78 47.4
Aqoxy5G00589 Aquilegia oxysepala HOM05D007734 ORTHO05D009807 9.9e-13 77.0 81 53.1
FAN22G2010 Fragaria x ananassa HOM05D007734 ORTHO05D001690 2.2e-12 75.9 49 71.4
A03p09150 Brassica napus HOM05D007734 ORTHO05D009807 2.9e-12 75.5 99 46.5
Sc13g0003750 Simmondsia chinensis HOM05D007734 ORTHO05D009807 4.9e-12 74.7 50 68.0
Nitab4.5_0000059g0330 Nicotiana tabacum HOM05D007734 ORTHO05D009807 1.4e-11 73.2 55 61.8
Actinidia00065 Actinidia chinensis HOM05D007734 ORTHO05D009807 5.1e-09 64.7 93 43.0
BcaB08g36639 Brassica carinata HOM05D007734 ORTHO05D009807 4.3e-08 61.6 41 68.3


User provided reference genes

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