Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 9.4e-161 570.1 277 100.0
Cfa015361 Carpinus fangiana HOM05D007775 ORTHO05D009858 9.5e-121 437.2 277 76.5
QL06p007731 Quercus lobata HOM05D007775 ORTHO05D009858 1.4e-103 380.2 279 68.8
Dinv38311 Davidia involucrata HOM05D007775 ORTHO05D009858 3.1e-95 352.4 274 62.0
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 1.1e-92 344.0 274 60.6
TAR362G1316 Trochodendron aralioides HOM05D007775 ORTHO05D009858 1.5e-89 333.6 282 57.8
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 2.4e-87 326.2 274 59.9
Thecc.04G279800 Theobroma cacao HOM05D007775 ORTHO05D009858 3.1e-87 325.9 272 58.5
GSVIVG01017782001 Vitis vinifera HOM05D007775 ORTHO05D009858 1.3e-85 320.5 264 59.8
TWI09G0118 Tripterygium wilfordii HOM05D007775 ORTHO05D009858 1.7e-85 320.1 273 59.7
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 8.4e-85 317.8 274 59.9
Potri.008G215200 Populus trichocarpa HOM05D007775 ORTHO05D009858 1.9e-84 316.6 281 56.2
Rhsim04G0218300 Rhododendron simsii HOM05D007775 ORTHO05D009858 3.2e-84 315.8 275 56.7
COL.COLO4_13909 Corchorus olitorius HOM05D007775 ORTHO05D009858 4.2e-84 315.5 274 55.8
Actinidia40242 Actinidia chinensis HOM05D007775 ORTHO05D009858 3.5e-83 312.4 275 56.7
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 6.0e-83 311.6 275 57.1
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 1.0e-82 310.8 275 57.5
ClCG06G005300 Citrullus lanatus HOM05D007775 ORTHO05D009858 1.3e-82 310.5 274 58.4
FvH4_4g17570 Fragaria vesca HOM05D007775 ORTHO05D009858 5.1e-82 308.5 274 55.8
Sabra08G0155600 Salix brachista HOM05D007775 ORTHO05D009858 5.1e-82 308.5 278 54.0
MELO3C021348.2 Cucumis melo HOM05D007775 ORTHO05D009858 1.9e-81 306.6 274 56.6
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 2.5e-81 306.2 275 57.5
Atru.chr4.2786 Acer truncatum HOM05D007775 ORTHO05D009858 5.6e-81 305.1 263 57.4
CsaV3_6G017340 Cucumis sativus L. HOM05D007775 ORTHO05D009858 1.6e-80 303.5 274 55.8
Gohir.D10G168200 Gossypium hirsutum HOM05D007775 ORTHO05D009858 1.6e-80 303.5 279 54.1
Cc03_g02150 Coffea canephora HOM05D007775 ORTHO05D009858 2.8e-80 302.8 266 54.1
Gorai.011G187800 Gossypium raimondii HOM05D007775 ORTHO05D009858 4.8e-80 302.0 282 53.9
Duzib151G1205 Durio zibethinus HOM05D007775 ORTHO05D009858 6.2e-80 301.6 258 57.8
Cpa.g.sc197.12 Carica papaya HOM05D007775 ORTHO05D009858 2.4e-79 299.7 255 57.6
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 7.6e-78 294.7 281 53.0
Eucgr.B01278 Eucalyptus grandis HOM05D007775 ORTHO05D009858 2.2e-77 293.1 281 56.9
CANSAT78G0244 Cannabis sativa HOM05D007775 ORTHO05D009858 4.9e-77 292.0 255 56.5
PGSC0003DMG400030783 Solanum tuberosum HOM05D007775 ORTHO05D009858 4.2e-76 288.9 270 54.8
Manes.15G015200 Manihot esculenta HOM05D007775 ORTHO05D009858 7.1e-76 288.1 257 59.9
Solyc06g054580.4 Solanum lycopersicum HOM05D007775 ORTHO05D009858 9.3e-76 287.7 265 54.3
AT2G39100 Arabidopsis thaliana HOM05D007775 ORTHO05D009858 6.0e-75 285.0 276 53.6
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 1.3e-74 283.9 278 51.1
Sopen06g019650 Solanum pennellii HOM05D007775 ORTHO05D009858 3.0e-74 282.7 265 53.6
FAN12G2546 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.5e-73 280.4 256 54.7
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 7.4e-73 278.1 274 52.9
Lj6A671T60 Lonicera japonica HOM05D007775 ORTHO05D009858 9.6e-73 277.7 262 54.2
THA.LOC104820248 Tarenaya hassleriana HOM05D007775 ORTHO05D009858 2.8e-72 276.2 269 52.4
Sp4g21450 Schrenkiella parvula HOM05D007775 ORTHO05D009858 6.2e-72 275.0 276 52.9
CARHR133870 Cardamine hirsuta HOM05D007775 ORTHO05D009858 1.1e-71 274.2 280 52.1
Sed0017003 Sechium edule HOM05D007775 ORTHO05D009858 1.1e-71 274.2 265 54.7
Gohir.A10G161700 Gossypium hirsutum HOM05D007775 ORTHO05D009858 1.4e-71 273.9 263 53.6
Carub.0004s2115 Capsella rubella HOM05D007775 ORTHO05D009858 2.4e-71 273.1 274 50.7
BraA04t18439Z Brassica rapa HOM05D007775 ORTHO05D009858 2.6e-70 269.6 279 51.3
MBI19_g01943_MAGBIO Magnolia biondii HOM05D007775 ORTHO05D009858 4.5e-70 268.9 276 51.4
Thhalv10017000m.g Eutrema salsugineum HOM05D007775 ORTHO05D009858 1.0e-69 267.7 270 52.2
C04p67030 Brassica napus HOM05D007775 ORTHO05D009858 6.5e-69 265.0 279 50.2
HanXRQChr03g0080871 Helianthus annuus HOM05D007775 ORTHO05D009858 2.5e-68 263.1 278 50.7
BolC4t28205H Brassica oleracea HOM05D007775 ORTHO05D009858 9.3e-68 261.2 281 49.8
CAN.G256.16 Capsicum annuum HOM05D007775 ORTHO05D009858 1.3e-66 257.3 264 51.5
Oeu021116.1 Olea europaea HOM05D007775 ORTHO05D009858 1.3e-66 257.3 258 50.4
arahy.Tifrunner.gnm1.ann1.J8QG6N Arachis hypogaea HOM05D007775 ORTHO05D009858 1.3e-64 250.8 292 48.6
Nitab4.5_0001459g0060 Nicotiana tabacum HOM05D007775 ORTHO05D009858 1.3e-64 250.8 243 53.5
PSO210G6602 Papaver somniferum HOM05D007775 ORTHO05D009858 2.8e-64 249.6 280 46.8
arahy.Tifrunner.gnm1.ann1.KJPE0P Arachis hypogaea HOM05D007775 ORTHO05D009858 1.1e-63 247.7 304 46.7
Nitab4.5_0002148g0040 Nicotiana tabacum HOM05D007775 ORTHO05D009858 1.1e-63 247.7 246 52.4
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 9.0e-63 244.6 265 48.3
Lalb_Chr13g0303771 Lupinus albus HOM05D007775 ORTHO05D009858 9.0e-63 244.6 291 47.4
DCAR_024553 Daucus carota HOM05D007775 ORTHO05D009858 4.2e-60 235.7 228 48.7
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 4.3e-57 225.7 263 47.5
A04p29770 Brassica napus HOM05D007775 ORTHO05D009858 7.4e-57 224.9 231 51.1
ECA240G4119 Erigeron canadensis HOM05D007775 ORTHO05D009858 2.7e-51 206.5 253 45.1
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 7.9e-51 204.9 615 29.3
Aqoxy2G03074 Aquilegia oxysepala HOM05D007775 ORTHO05D009858 1.4e-50 204.1 216 49.1
AL4G36400 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 5.1e-50 202.2 212 51.9
BcaC02g12905 Brassica carinata HOM05D007775 ORTHO05D009858 4.8e-48 195.7 259 44.4
Sc06g0007440 Simmondsia chinensis HOM05D007775 ORTHO05D009858 1.4e-47 194.1 251 42.6
FAN12G2785 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.0e-42 177.9 183 49.2
ATR0706G202 Amborella trichopoda HOM05D007775 ORTHO05D009858 3.5e-38 162.9 215 41.9
AL92U10060 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 8.5e-37 158.3 185 48.1
QL06p007898 Quercus lobata HOM05D007775 ORTHO05D009858 8.0e-35 151.8 118 66.1
SMO147G0036 Selaginella moellendorffii HOM05D007775 ORTHO05D009858 1.1e-31 141.4 316 29.7
Pp3c21_11960 Physcomitrium patens HOM05D007775 ORTHO05D009858 2.4e-31 140.2 304 30.9
vmacro08108 Vaccinium macrocarpon HOM05D007775 ORTHO05D009858 1.6e-27 127.5 90 63.3
CSS0050081 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 2.6e-25 120.2 83 69.9
SEGI_15450 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 3.4e-25 119.8 126 46.8
CSS0036115 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 5.7e-25 119.0 102 57.8
CSS0035717 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 7.5e-25 118.6 102 57.8
Prupe.8G004900 Prunus persica HOM05D007775 ORTHO05D009858 5.5e-20 102.4 84 58.3
MSTRG.10078 Avicennia marina HOM05D007775 ORTHO05D009858 1.6e-19 100.9 93 53.8
SEGI_08073 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 7.5e-17 92.0 143 37.8
COL.COLO4_10908 Corchorus olitorius HOM05D007775 ORTHO05D009858 1.9e-12 77.4 67 50.7
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 2.1e-11 73.9 270 25.2
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 8.0e-11 72.0 271 25.8
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 3.0e-10 70.1 269 24.2
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 3.0e-10 70.1 274 25.9
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 8.9e-10 68.6 269 24.5
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 8.9e-10 68.6 268 24.6
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.2e-09 68.2 268 23.1
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 1.5e-09 67.8 268 23.1
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.5e-09 67.8 268 23.1
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 1.5e-09 67.8 268 24.6
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.0e-09 67.4 268 23.1
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 2.6e-09 67.0 269 23.4
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 7.5e-09 65.5 272 22.4
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 7.5e-09 65.5 259 25.5
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 7.5e-09 65.5 271 24.4
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 7.5e-09 65.5 276 25.7
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 9.8e-09 65.1 273 23.8
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 2.2e-08 63.9 91 35.2
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 2.9e-08 63.5 91 36.3
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 3.7e-08 63.2 116 32.8
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 4.9e-08 62.8 91 36.3
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 8.3e-08 62.0 120 35.0
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 8.3e-08 62.0 102 36.3
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 8.3e-08 62.0 89 37.1
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 1.1e-07 61.6 276 23.9
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 1.8e-07 60.8 102 35.3
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 2.4e-07 60.5 93 31.2
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 2.4e-07 60.5 91 35.2
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 2.4e-07 60.5 91 38.5
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 3.2e-07 60.1 91 34.1
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 4.1e-07 59.7 91 35.2
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 5.4e-07 59.3 102 35.3
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 5.4e-07 59.3 92 34.8
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 5.4e-07 59.3 92 32.6
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 7.0e-07 58.9 101 31.7
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 9.2e-07 58.5 90 34.4
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 9.2e-07 58.5 91 36.3
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 9.2e-07 58.5 92 35.9
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 1.2e-06 58.2 91 34.1
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 1.2e-06 58.2 91 33.0
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 1.2e-06 58.2 90 32.2
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 1.2e-06 58.2 270 21.9
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 1.2e-06 58.2 91 30.8
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 1.2e-06 58.2 93 32.3
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.2e-06 58.2 93 34.4
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 1.6e-06 57.8 97 36.1
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 1.6e-06 57.8 93 34.4
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 1.6e-06 57.8 93 34.4
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 1.6e-06 57.8 92 31.5
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 2.0e-06 57.4 89 34.8
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 2.7e-06 57.0 101 30.7
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 2.7e-06 57.0 88 36.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 3.5e-06 56.6 104 31.7
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 3.5e-06 56.6 93 32.3
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 3.5e-06 56.6 269 23.4
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 4.6e-06 56.2 91 31.9
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 4.6e-06 56.2 88 36.4
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 4.6e-06 56.2 92 34.8
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 7.8e-06 55.5 272 21.7
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 7.8e-06 55.5 272 21.7
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 7.8e-06 55.5 107 31.8


User provided reference genes

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