Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G083900 Carya illinoinensis HOM05D006081 ORTHO05D007628 5.7e-104 380.9 196 100.0
CiPaw.01G149700 Carya illinoinensis HOM05D006081 ORTHO05D007628 1.1e-73 280.4 195 76.9
Cfa015373 Carpinus fangiana HOM05D006081 ORTHO05D007628 3.7e-71 271.9 197 74.1
Prupe.1G138200 Prunus persica HOM05D006081 ORTHO05D007628 1.5e-64 250.0 202 67.3
QL06p008580 Quercus lobata HOM05D006081 ORTHO05D007628 7.5e-64 247.7 195 67.7
GSVIVG01017744001 Vitis vinifera HOM05D006081 ORTHO05D007628 3.2e-62 242.3 195 65.1
vmacro08134 Vaccinium macrocarpon HOM05D006081 ORTHO05D007628 7.1e-62 241.1 194 66.0
Rhsim04G0220300 Rhododendron simsii HOM05D006081 ORTHO05D007628 9.2e-62 240.7 194 64.9
Atru.chr4.2827 Acer truncatum HOM05D006081 ORTHO05D007628 2.1e-61 239.6 189 66.7
VMungo1309G0529 Vigna mungo HOM05D006081 ORTHO05D007628 5.1e-60 235.0 194 63.4
Potri.008G210100 Populus trichocarpa HOM05D006081 ORTHO05D007628 8.6e-60 234.2 196 65.8
Phvul.009G246800 Phaseolus vulgaris HOM05D006081 ORTHO05D007628 1.1e-59 233.8 194 63.9
Sabra08G0154300 Salix brachista HOM05D006081 ORTHO05D007628 2.5e-59 232.6 196 65.8
Dinv29771 Davidia involucrata HOM05D006081 ORTHO05D007628 5.6e-59 231.5 194 66.0
Manes.15G013500 Manihot esculenta HOM05D006081 ORTHO05D007628 5.6e-59 231.5 196 63.3
Glyma.15G153100 Glycine max HOM05D006081 ORTHO05D007628 7.3e-59 231.1 194 62.4
Lj6g0000146 Lotus japonicus HOM05D006081 ORTHO05D007628 7.3e-59 231.1 194 61.9
TAR636G3617 Trochodendron aralioides HOM05D006081 ORTHO05D007628 2.8e-58 229.2 195 64.6
CSS0030149 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 6.2e-58 228.0 194 62.4
Glyma.09G045900 Glycine max HOM05D006081 ORTHO05D007628 8.1e-58 227.6 194 62.4
Medtr2g436940 Medicago truncatula HOM05D006081 ORTHO05D007628 1.1e-57 227.3 197 62.9
Cpa.g.sc16.161 Carica papaya HOM05D006081 ORTHO05D007628 1.8e-57 226.5 191 61.3
Thecc.04G283000 Theobroma cacao HOM05D006081 ORTHO05D007628 1.8e-57 226.5 192 63.5
RcHm_v2.0_Chr4g0421971 Rosa chinensis HOM05D006081 ORTHO05D007628 3.1e-57 225.7 196 61.2
Eucgr.H03897 Eucalyptus grandis HOM05D006081 ORTHO05D007628 4.0e-57 225.3 194 62.4
Manes.03G194000 Manihot esculenta HOM05D006081 ORTHO05D007628 4.0e-57 225.3 196 60.7
TWI53G0242 Tripterygium wilfordii HOM05D006081 ORTHO05D007628 5.2e-57 224.9 193 61.7
Actinidia40266 Actinidia chinensis HOM05D006081 ORTHO05D007628 6.8e-57 224.6 192 62.0
Cc00_g10580 Coffea canephora HOM05D006081 ORTHO05D007628 8.9e-57 224.2 194 58.2
Oeu027733.1 Olea europaea HOM05D006081 ORTHO05D007628 4.4e-56 221.9 194 61.9
MD16G1171400 Malus domestica HOM05D006081 ORTHO05D007628 9.9e-56 220.7 199 61.8
Gohir.D02G054100 Gossypium hirsutum HOM05D006081 ORTHO05D007628 2.2e-55 219.5 190 60.5
Gorai.005G059600 Gossypium raimondii HOM05D006081 ORTHO05D007628 2.2e-55 219.5 190 60.5
FAN07G2255 Fragaria x ananassa HOM05D006081 ORTHO05D007628 2.9e-55 219.2 194 59.8
FvH4_4g17860 Fragaria vesca HOM05D006081 ORTHO05D007628 3.8e-55 218.8 194 59.8
Lalb_Chr18g0051761 Lupinus albus HOM05D006081 ORTHO05D007628 6.4e-55 218.0 200 58.0
Psat1g153280 Pisum sativum HOM05D006081 ORTHO05D007628 6.4e-55 218.0 194 60.8
FAN12G2613 Fragaria x ananassa HOM05D006081 ORTHO05D007628 1.9e-54 216.5 194 59.3
FAN17G1774 Fragaria x ananassa HOM05D006081 ORTHO05D007628 2.4e-54 216.1 194 58.8
CANSAT78G1428 Cannabis sativa HOM05D006081 ORTHO05D007628 3.2e-54 215.7 196 59.2
Gohir.A02G048800 Gossypium hirsutum HOM05D006081 ORTHO05D007628 3.2e-54 215.7 190 61.1
CsaV3_6G017270 Cucumis sativus L. HOM05D006081 ORTHO05D007628 4.2e-54 215.3 192 57.8
PGR031G1107 Punica granatum HOM05D006081 ORTHO05D007628 7.1e-54 214.5 193 57.0
Ca_01966_v3 Cicer arietinum L. HOM05D006081 ORTHO05D007628 1.6e-53 213.4 194 59.3
Duzib151G0152 Durio zibethinus HOM05D006081 ORTHO05D007628 1.6e-53 213.4 192 60.9
TAR365G0221 Trochodendron aralioides HOM05D006081 ORTHO05D007628 2.7e-53 212.6 163 67.5
arahy.Tifrunner.gnm1.ann1.EZB5Q6 Arachis hypogaea HOM05D006081 ORTHO05D007628 3.5e-53 212.2 195 58.5
Migut.N00097 Erythranthe guttata HOM05D006081 ORTHO05D007628 3.5e-53 212.2 196 57.7
arahy.Tifrunner.gnm1.ann1.TA2ZSY Arachis hypogaea HOM05D006081 ORTHO05D007628 7.8e-53 211.1 195 58.5
MSTRG.21799 Avicennia marina HOM05D006081 ORTHO05D007628 7.8e-53 211.1 195 56.9
SGA_v2.0_scaffold55G19699 Striga asiatica HOM05D006081 ORTHO05D007628 2.3e-52 209.5 198 55.6
HanXRQChr03g0079991 Helianthus annuus HOM05D006081 ORTHO05D007628 6.6e-52 208.0 192 57.3
MELO3C021343.2 Cucumis melo HOM05D006081 ORTHO05D007628 8.7e-52 207.6 192 56.2
ClCG06G005230 Citrullus lanatus HOM05D006081 ORTHO05D007628 1.1e-51 207.2 192 57.3
Ciclev10005978m.g Citrus clementina HOM05D006081 ORTHO05D007628 1.1e-51 207.2 193 57.5
PSO170G3586 Papaver somniferum HOM05D006081 ORTHO05D007628 1.5e-51 206.8 191 59.2
ECA240G0281 Erigeron canadensis HOM05D006081 ORTHO05D007628 2.5e-51 206.1 194 57.7
Lalb_Chr20g0114491 Lupinus albus HOM05D006081 ORTHO05D007628 3.3e-51 205.7 194 57.2
SalBow5G1281 Salvia bowleyana HOM05D006081 ORTHO05D007628 4.3e-51 205.3 195 54.4
Nitab4.5_0003972g0010 Nicotiana tabacum HOM05D006081 ORTHO05D007628 1.2e-50 203.8 192 56.8
MBI19_g30830_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 2.8e-50 202.6 196 55.1
Oeu023291.2 Olea europaea HOM05D006081 ORTHO05D007628 4.7e-50 201.8 233 51.5
Lj6A673G88 Lonicera japonica HOM05D006081 ORTHO05D007628 6.2e-50 201.4 132 70.5
PSO210G2816 Papaver somniferum HOM05D006081 ORTHO05D007628 6.2e-50 201.4 191 58.6
DCAR_030534 Daucus carota HOM05D006081 ORTHO05D007628 1.1e-49 200.7 197 55.8
Nitab4.5_0003749g0060 Nicotiana tabacum HOM05D006081 ORTHO05D007628 1.1e-49 200.7 192 56.2
Peaxi162Scf00534g00212 Petunia axillaris HOM05D006081 ORTHO05D007628 1.4e-49 200.3 193 54.9
Solyc01g067080.3 Solanum lycopersicum HOM05D006081 ORTHO05D007628 3.1e-49 199.1 193 51.8
Sopen01g028790 Solanum pennellii HOM05D006081 ORTHO05D007628 4.0e-49 198.7 193 51.8
PGSC0003DMG400022662 Solanum tuberosum HOM05D006081 ORTHO05D007628 9.0e-49 197.6 193 52.3
Sc13g0003510 Simmondsia chinensis HOM05D006081 ORTHO05D007628 1.2e-48 197.2 193 56.5
THA.LOC104820251 Tarenaya hassleriana HOM05D006081 ORTHO05D007628 1.2e-48 197.2 192 53.6
Lsat_1_v5_gn_5_49301 Lactuca sativa HOM05D006081 ORTHO05D007628 1.5e-48 196.8 192 54.2
TPR.G26808 Trifolium pratense HOM05D006081 ORTHO05D007628 2.0e-48 196.4 131 71.8
Thhalv10021583m.g Eutrema salsugineum HOM05D006081 ORTHO05D007628 4.4e-48 195.3 196 55.6
Aa31LG8G8110 Aethionema arabicum HOM05D006081 ORTHO05D007628 9.9e-48 194.1 195 54.9
CARHR097370 Cardamine hirsuta HOM05D006081 ORTHO05D007628 9.9e-48 194.1 194 56.2
Sp3g19430 Schrenkiella parvula HOM05D006081 ORTHO05D007628 2.9e-47 192.6 192 53.6
Sed0014998 Sechium edule HOM05D006081 ORTHO05D007628 2.9e-47 192.6 192 54.7
BcaC01g03506 Brassica carinata HOM05D006081 ORTHO05D007628 6.4e-47 191.4 193 54.9
BolC3t17454H Brassica oleracea HOM05D006081 ORTHO05D007628 6.4e-47 191.4 193 54.9
C03p51690 Brassica napus HOM05D006081 ORTHO05D007628 1.1e-46 190.7 193 54.4
AL3G35480 Arabidopsis lyrata HOM05D006081 ORTHO05D007628 3.2e-46 189.1 196 54.6
AT3G21400 Arabidopsis thaliana HOM05D006081 ORTHO05D007628 1.3e-44 183.7 195 53.8
BraA03t13376Z Brassica rapa HOM05D006081 ORTHO05D007628 1.3e-44 183.7 196 51.5
BcaB04g19166 Brassica carinata HOM05D006081 ORTHO05D007628 1.7e-44 183.3 192 51.0
A03p42230 Brassica napus HOM05D006081 ORTHO05D007628 1.7e-44 183.3 196 51.5
FAN12G2474 Fragaria x ananassa HOM05D006081 ORTHO05D007628 8.7e-44 181.0 114 74.6
Carub.0003s2143 Capsella rubella HOM05D006081 ORTHO05D007628 2.5e-43 179.5 195 52.8
unitig_26.g10542 Utricularia gibba HOM05D006081 ORTHO05D007628 5.6e-43 178.3 193 50.8
Aqoxy2G03026 Aquilegia oxysepala HOM05D006081 ORTHO05D007628 9.6e-43 177.6 131 67.9
CDE02G2676 Ceratophyllum demersum HOM05D006081 ORTHO05D000739 4.8e-42 175.3 196 52.0
CSS0018730 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 2.4e-41 172.9 114 71.1
EL10Ac3g06586 Beta vulgaris HOM05D006081 ORTHO05D007628 5.3e-41 171.8 192 46.9
AUR62043167 Chenopodium quinoa HOM05D006081 ORTHO05D007628 5.3e-41 171.8 125 60.0
BcaC05g28170 Brassica carinata HOM05D006081 ORTHO05D007628 1.5e-40 170.2 192 48.4
C05p42070 Brassica napus HOM05D006081 ORTHO05D007628 1.5e-40 170.2 192 48.4
BolC5t32937H Brassica oleracea HOM05D006081 ORTHO05D007628 1.5e-40 170.2 192 48.4
BcaB06g26235 Brassica carinata HOM05D006081 ORTHO05D007628 5.8e-40 168.3 195 48.7
CDE09G1305 Ceratophyllum demersum HOM05D006081 ORTHO05D007628 9.9e-40 167.5 196 50.0
CAN.G556.12 Capsicum annuum HOM05D006081 ORTHO05D007628 5.4e-38 161.8 111 67.6
AUR62036825 Chenopodium quinoa HOM05D006081 ORTHO05D007628 2.1e-37 159.8 127 58.3
ATR0706G092 Amborella trichopoda HOM05D006081 ORTHO05D007628 1.8e-36 156.8 125 65.6
Os12g0540700 Oryza sativa ssp. japonica HOM05D006081 ORTHO05D007628 5.6e-35 151.8 128 52.3
A05p27230 Brassica napus HOM05D006081 ORTHO05D007628 1.3e-34 150.6 175 47.4
Zm00001eb410420 Zea mays HOM05D006081 ORTHO05D007628 8.1e-34 147.9 193 41.5
BraA05t21612Z Brassica rapa HOM05D006081 ORTHO05D007628 2.4e-33 146.4 175 45.1
TAR365G0700 Trochodendron aralioides HOM05D006081 ORTHO05D007628 5.3e-33 145.2 93 74.2
SEGI_25455 Sequoiadendron giganteum HOM05D006081 ORTHO05D007628 1.2e-32 144.1 187 46.0
Actinidia01470 Actinidia chinensis HOM05D006081 ORTHO05D007628 2.6e-32 142.9 196 46.9
HPP92_001321 Vanilla planifolia HOM05D006081 ORTHO05D007628 2.2e-31 139.8 181 46.4
Haze_01224 Corylus avellana HOM05D006081 ORTHO05D007628 2.9e-31 139.4 84 76.2
MBI19_g12810_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 2.3e-28 129.8 98 58.2
MD13G1169900 Malus domestica HOM05D006081 ORTHO05D007628 1.5e-27 127.1 133 59.4
AUR62038616 Chenopodium quinoa HOM05D006081 ORTHO05D007628 1.4e-25 120.6 92 55.4
Potri.010G024000 Populus trichocarpa HOM05D006081 ORTHO05D007628 1.1e-22 110.9 64 78.1
CSS0011440 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 4.2e-22 109.0 111 53.2
Haze_01225 Corylus avellana HOM05D006081 ORTHO05D007628 2.5e-19 99.8 101 63.4
Pp3c1_29830 Physcomitrium patens HOM05D006081 ORTHO05D007628 8.2e-18 94.7 122 42.6
Mapoly0041s0011 Marchantia polymorpha HOM05D006081 ORTHO05D007628 2.6e-16 89.7 129 39.5
Nn5g30060 Nelumbo nucifera HOM05D006081 ORTHO05D007628 2.2e-15 86.7 104 54.8
AagrBONN_evm.TU.Sc2ySwM_368.2309 Anthoceros agrestis HOM05D006081 ORTHO05D007628 1.6e-13 80.5 184 31.0
CBR_g29894 Chara braunii HOM05D008095 ORTHO05D010826 3.9e-12 75.9 114 33.3
FAN22G0279 Fragaria x ananassa HOM05D006081 ORTHO05D007628 2.2e-10 70.1 98 46.9
arahy.Tifrunner.gnm1.ann1.LB6QPX Arachis hypogaea HOM05D006081 ORTHO05D007628 2.2e-07 60.1 39 71.8
BolC7t43135H Brassica oleracea HOM05D006081 ORTHO05D033520 2.2e-07 60.1 48 60.4
Hma1.2p1_1676F.1_g297010 Hydrangea macrophylla HOM05D006081 ORTHO05D007628 8.5e-07 58.2 37 73.0
arahy.Tifrunner.gnm1.ann1.GB8LCX Arachis hypogaea HOM05D006081 ORTHO05D007628 7.2e-06 55.1 46 60.9


User provided reference genes

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