Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.6e-65 251.9 129 100.0
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.1e-46 189.1 125 80.8
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.1e-46 189.1 125 80.8
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.3e-32 142.5 125 62.4
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.0e-29 131.7 121 59.5
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.5e-28 129.8 118 59.3
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 3.1e-26 122.1 119 55.5
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 4.1e-26 121.7 121 51.2
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 4.5e-25 118.2 119 53.8
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 5.9e-25 117.9 118 54.2
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 5.9e-25 117.9 121 49.6
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 7.8e-25 117.5 119 51.3
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 7.8e-25 117.5 120 52.5
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 5.0e-24 114.8 120 53.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.1e-23 113.6 121 52.1
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 1.5e-23 113.2 124 54.8
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 3.3e-23 112.1 124 53.2
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 4.3e-23 111.7 121 48.8
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 4.3e-23 111.7 124 48.4
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 4.3e-23 111.7 112 53.6
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 5.6e-23 111.3 123 49.6
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 9.5e-23 110.5 128 46.1
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 9.5e-23 110.5 123 47.2
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.6e-22 109.8 120 51.7
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.6e-22 109.8 118 50.0
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.6e-22 109.8 112 55.4
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 2.1e-22 109.4 120 48.3
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.1e-22 109.4 120 48.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 6.1e-22 107.8 114 51.8
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 6.1e-22 107.8 120 51.7
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 6.1e-22 107.8 123 48.0
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 8.0e-22 107.5 118 49.2
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 1.0e-21 107.1 120 50.8
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.0e-21 107.1 120 47.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.4e-21 106.7 114 51.8
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.4e-21 106.7 114 46.5
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.4e-21 106.7 123 48.0
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.4e-21 106.7 121 49.6
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 1.8e-21 106.3 125 44.0
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.8e-21 106.3 90 53.3
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 4.0e-21 105.1 123 44.7
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 4.0e-21 105.1 121 48.8
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.2e-21 104.8 98 61.2
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 6.8e-21 104.4 124 48.4
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.8e-21 104.4 120 45.8
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 6.8e-21 104.4 120 47.5
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.6e-20 102.4 116 47.4
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 2.6e-20 102.4 116 47.4
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 3.4e-20 102.1 119 47.1
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 4.4e-20 101.7 122 49.2
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 4.4e-20 101.7 123 45.5
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 5.7e-20 101.3 116 50.0
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 5.7e-20 101.3 124 43.5
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 1.3e-19 100.1 120 47.5
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.3e-19 100.1 125 46.4
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 2.2e-19 99.4 120 44.2
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 2.2e-19 99.4 120 44.2
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.2e-19 99.4 119 46.2
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.9e-19 99.0 117 47.0
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 2.9e-19 99.0 120 49.2
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.4e-18 96.7 117 45.3
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.4e-18 96.7 122 47.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.8e-18 96.3 121 48.8
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 9.2e-18 94.0 117 44.4
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 9.2e-18 94.0 123 44.7
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 2.0e-17 92.8 120 42.5
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 2.7e-17 92.4 133 41.4
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.0e-16 90.5 121 46.3
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-16 89.7 112 46.4
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 1.7e-16 89.7 121 46.3
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.3e-16 89.4 118 44.1
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.3e-16 89.4 121 42.1
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.3e-16 89.4 120 43.3
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 3.0e-16 89.0 115 44.3
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 3.9e-16 88.6 91 57.1
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 3.9e-16 88.6 119 45.4
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 6.6e-16 87.8 119 46.2
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 6.6e-16 87.8 119 46.2
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 6.6e-16 87.8 119 46.2
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 8.6e-16 87.4 119 46.2
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 8.6e-16 87.4 106 50.0
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 8.6e-16 87.4 119 46.2
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 8.6e-16 87.4 119 45.4
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 8.6e-16 87.4 119 46.2
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.1e-15 87.0 122 44.3
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.5e-15 86.7 123 43.9
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 1.5e-15 86.7 119 45.4
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 3.3e-15 85.5 118 43.2
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 7.3e-15 84.3 119 45.4
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 7.3e-15 84.3 119 44.5
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 7.3e-15 84.3 119 44.5
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.2e-14 83.6 117 43.6
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-14 83.2 119 44.5
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 3.6e-14 82.0 125 40.8
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.6e-14 82.0 118 44.1
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 4.7e-14 81.6 115 42.6
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 4.7e-14 81.6 119 45.4
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 4.7e-14 81.6 109 39.4
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.0e-14 80.9 126 42.1
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 8.0e-14 80.9 112 43.8
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.4e-13 80.1 122 43.4
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.4e-13 80.1 118 42.4
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 1.4e-13 80.1 116 43.1
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 1.4e-13 80.1 125 40.8
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 2.3e-13 79.3 125 40.8
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 3.1e-13 79.0 123 37.4
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 4.0e-13 78.6 119 44.5
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 4.0e-13 78.6 114 39.5
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 6.8e-13 77.8 97 46.4
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 8.9e-13 77.4 118 41.5
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 8.9e-13 77.4 89 47.2
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.2e-12 77.0 118 41.5
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 1.2e-12 77.0 113 41.6
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.5e-12 76.6 114 38.6
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 1.5e-12 76.6 119 42.0
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.5e-12 76.6 131 39.7
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.6e-12 75.9 117 41.9
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 4.4e-12 75.1 117 42.7
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 4.4e-12 75.1 112 42.9
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.8e-12 74.7 105 43.8
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 5.8e-12 74.7 93 45.2
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 7.5e-12 74.3 109 43.1
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.5e-12 74.3 131 38.9
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 9.8e-12 73.9 120 41.7
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 9.8e-12 73.9 123 40.7
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 2.2e-11 72.8 122 38.5
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 2.9e-11 72.4 119 39.5
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 6.4e-11 71.2 114 36.8
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 8.3e-11 70.9 115 42.6
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-10 70.5 119 39.5
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 3.2e-10 68.9 100 45.0
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 4.1e-10 68.6 99 45.5
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.4e-10 68.2 74 55.4
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 7.0e-10 67.8 114 39.5
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 7.0e-10 67.8 114 43.0
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.2e-10 67.4 99 42.4
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 1.2e-09 67.0 119 39.5
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.0e-09 66.2 90 42.2
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 3.5e-09 65.5 119 37.8
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-08 63.2 116 37.1
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 3.0e-08 62.4 119 37.0
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 3.0e-08 62.4 119 34.5
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 3.0e-08 62.4 116 36.2
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 3.9e-08 62.0 119 37.0
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 5.0e-08 61.6 119 34.5
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 6.6e-08 61.2 117 40.2
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 8.6e-08 60.8 115 39.1
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 1.1e-07 60.5 119 34.5
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 1.1e-07 60.5 119 34.5
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.5e-07 59.3 123 37.4
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.5e-07 59.3 113 36.3
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 5.6e-07 58.2 91 42.9
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 5.6e-07 58.2 91 42.9
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 5.6e-07 58.2 91 42.9
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 5.6e-07 58.2 91 42.9
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 7.3e-07 57.8 113 31.9
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 9.5e-07 57.4 111 37.8
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 1.6e-06 56.6 119 34.5
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 2.1e-06 56.2 126 34.9
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.1e-06 56.2 127 36.2
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 2.8e-06 55.8 106 38.7
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 8.1e-06 54.3 74 48.6


User provided reference genes

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