Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.4e-76 288.9 157 100.0
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 3.2e-49 198.7 154 69.5
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.5e-46 189.9 155 69.7
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.5e-46 189.9 155 69.7
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 5.7e-46 188.0 159 64.8
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.8e-45 184.9 152 71.7
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 4.8e-45 184.9 151 67.5
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.4e-44 183.3 158 66.5
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.1e-44 182.2 153 70.6
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 2.0e-43 179.5 150 66.0
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 3.4e-43 178.7 156 64.7
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 4.5e-43 178.3 156 63.5
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 5.9e-43 177.9 155 63.2
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 2.9e-42 175.6 155 57.4
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 5.0e-42 174.9 165 59.4
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 5.0e-42 174.9 153 58.8
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 3.2e-41 172.2 156 62.8
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 4.2e-41 171.8 148 63.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 5.5e-41 171.4 146 67.8
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 5.5e-41 171.4 152 62.5
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 5.5e-41 171.4 156 64.1
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 7.2e-41 171.0 159 61.0
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 7.2e-41 171.0 154 61.7
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.1e-40 169.5 152 62.5
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 3.6e-40 168.7 152 58.6
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 3.6e-40 168.7 153 57.5
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 6.1e-40 167.9 155 58.7
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 7.9e-40 167.5 148 64.2
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 7.9e-40 167.5 154 57.8
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.4e-39 166.8 152 61.8
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 3.0e-39 165.6 148 63.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 3.9e-39 165.2 158 62.7
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 5.2e-39 164.9 155 57.4
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 8.8e-39 164.1 156 62.2
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.1e-38 163.7 152 61.8
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.5e-38 163.3 154 61.0
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 4.4e-38 161.8 154 61.7
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.7e-38 161.4 155 57.4
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 5.7e-38 161.4 157 61.1
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.7e-37 159.8 156 59.0
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 8.2e-37 157.5 154 61.0
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.1e-36 157.1 149 61.1
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 1.4e-36 156.8 156 58.3
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-36 156.8 156 58.3
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.4e-36 156.8 146 58.9
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.1e-36 155.2 150 56.0
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.1e-36 154.1 154 53.2
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-35 153.7 132 71.2
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 1.2e-35 153.7 154 57.1
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.7e-35 151.0 158 53.8
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 2.2e-34 149.4 148 58.1
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 2.2e-34 149.4 157 56.1
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.8e-34 148.7 155 57.4
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 8.5e-34 147.5 151 55.6
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.5e-33 146.7 159 56.0
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 4.2e-33 145.2 153 51.0
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 5.5e-33 144.8 154 55.2
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 9.4e-33 144.1 152 56.6
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 9.4e-33 144.1 156 51.9
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.1e-32 142.9 163 51.5
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 3.6e-32 142.1 155 52.9
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.1e-32 141.4 125 62.4
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.4e-31 140.2 156 51.3
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 1.2e-30 137.1 164 47.0
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-30 136.3 153 47.1
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-30 136.3 153 47.1
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 7.5e-30 134.4 155 52.3
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 7.5e-30 134.4 155 52.3
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.2e-29 132.9 174 47.7
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 8.2e-29 131.0 153 51.0
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.1e-28 130.6 158 50.0
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.8e-28 129.8 185 45.4
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 7.0e-28 127.9 158 50.6
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 7.0e-28 127.9 151 51.0
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 7.0e-28 127.9 154 49.4
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.0e-27 126.3 145 51.7
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.5e-27 125.2 149 48.3
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.7e-27 124.4 161 48.4
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.0e-26 124.0 129 49.6
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.3e-26 123.6 176 43.8
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.3e-26 123.6 164 47.0
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.7e-26 123.2 149 46.3
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 1.7e-26 123.2 158 50.6
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 5.0e-26 121.7 155 50.3
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 8.5e-26 120.9 154 51.3
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 1.5e-25 120.2 148 48.0
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.9e-25 119.8 106 70.8
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 2.5e-25 119.4 148 48.6
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.2e-24 117.1 149 51.0
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.6e-24 115.5 127 49.6
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.1e-24 114.8 148 48.0
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 8.0e-24 114.4 153 49.0
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.0e-23 114.0 150 46.7
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.0e-23 114.0 149 47.0
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-23 114.0 149 49.7
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.4e-23 113.6 127 48.8
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.8e-23 113.2 153 48.4
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 3.0e-23 112.5 157 45.2
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 8.8e-23 110.9 151 45.7
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.2e-22 110.5 156 47.4
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 2.0e-22 109.8 152 46.7
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 4.4e-22 108.6 156 44.2
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 5.7e-22 108.2 127 47.2
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 5.7e-22 108.2 142 45.8
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 7.5e-22 107.8 151 45.7
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 7.5e-22 107.8 142 50.7
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 2.8e-21 105.9 150 44.7
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 2.8e-21 105.9 153 45.8
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 1.4e-20 103.6 152 46.7
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.4e-20 101.7 152 44.1
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.4e-20 101.7 125 50.4
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.0e-20 101.3 152 44.1
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-19 100.5 156 43.6
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.0e-19 99.8 162 42.6
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.0e-19 99.8 183 38.3
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 2.7e-19 99.4 153 47.1
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 3.5e-19 99.0 147 42.9
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-19 99.0 153 46.4
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-19 99.0 132 48.5
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.5e-19 98.6 152 43.4
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 4.5e-19 98.6 103 53.4
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 4.5e-19 98.6 153 47.1
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 5.9e-19 98.2 166 41.0
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 5.9e-19 98.2 141 46.1
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 5.9e-19 98.2 153 46.4
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 7.7e-19 97.8 166 40.4
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 7.7e-19 97.8 153 46.4
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-18 97.4 153 46.4
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 1.0e-18 97.4 123 47.2
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 6.5e-18 94.7 153 45.8
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 6.5e-18 94.7 153 45.8
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.5e-17 93.6 154 41.6
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-17 93.2 153 45.8
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 2.5e-17 92.8 139 43.9
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 2.5e-17 92.8 173 39.3
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 3.3e-17 92.4 145 42.1
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 3.3e-17 92.4 153 45.1
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 9.5e-17 90.9 145 40.0
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 1.2e-16 90.5 157 42.7
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 2.1e-16 89.7 161 42.9
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 2.1e-16 89.7 155 40.6
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 3.6e-16 89.0 148 39.9
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 1.0e-15 87.4 158 42.4
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-15 87.4 155 38.7
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 1.4e-15 87.0 150 40.7
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.4e-15 87.0 154 40.9
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 2.3e-15 86.3 155 38.7
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 3.0e-15 85.9 155 38.1
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 3.0e-15 85.9 151 41.7
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 6.8e-15 84.7 192 34.4
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.9e-15 84.3 150 38.0
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 1.5e-14 83.6 172 37.2
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 1.5e-14 83.6 172 35.5
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 5.7e-14 81.6 172 35.5
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 7.5e-14 81.3 181 35.4
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.3e-13 80.5 145 42.1
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 1.7e-13 80.1 97 49.5
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 1.7e-13 80.1 149 43.6
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 2.2e-13 79.7 155 36.8
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 2.2e-13 79.7 194 34.0
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 6.3e-13 78.2 196 33.2
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 1.1e-12 77.4 172 35.5
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 1.1e-12 77.4 172 35.5
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 2.4e-12 76.3 173 35.8
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 4.1e-12 75.5 140 44.3
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 5.4e-12 75.1 155 36.1
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 1.6e-11 73.6 140 40.0
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-11 73.2 167 38.3
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 2.0e-11 73.2 151 35.1
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 3.5e-11 72.4 151 37.1
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 5.9e-11 71.6 128 37.5
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 1.3e-10 70.5 120 40.8
ECA234G1138 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.7e-10 70.1 145 41.4
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.7e-10 70.1 184 35.3
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.3e-10 69.7 108 37.0
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.3e-10 69.7 154 35.7
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.9e-10 69.3 121 42.1
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.8e-10 68.9 160 34.4
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 5.0e-10 68.6 137 38.0
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.1e-09 67.4 136 41.9
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 4.3e-09 65.5 143 42.0
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.2e-08 63.9 140 37.1
Oeu000388.1 Olea europaea HOM05D015020 ORTHO05D016999 1.0e-07 60.8 152 34.9
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 4.4e-06 55.5 153 34.6
A02p14820 Brassica napus HOM05D008071 ORTHO05D009954 7.5e-06 54.7 144 31.2
C02p24260 Brassica napus HOM05D008071 ORTHO05D009954 9.8e-06 54.3 144 31.2
BraA02t06549Z Brassica rapa HOM05D008071 ORTHO05D009954 9.8e-06 54.3 144 31.2


User provided reference genes

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