Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.4e-88 329.7 186 100.0
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 4.6e-71 271.6 186 78.0
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.5e-69 265.8 187 75.4
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 1.1e-67 260.4 194 79.9
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 1.5e-66 256.5 187 74.9
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.3e-65 253.4 192 74.5
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 2.5e-64 249.2 195 68.2
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 5.5e-64 248.1 191 74.9
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 6.1e-63 244.6 194 68.0
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 6.1e-63 244.6 188 70.2
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 6.1e-63 244.6 192 69.8
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 3.9e-62 241.9 189 69.3
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 1.1e-61 240.4 192 69.3
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 1.5e-61 240.0 188 67.6
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 4.3e-61 238.4 186 68.3
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 1.1e-59 233.8 189 67.7
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 1.8e-59 233.0 189 68.8
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 2.4e-59 232.6 197 73.6
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 5.3e-59 231.5 194 66.5
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 6.9e-59 231.1 193 66.8
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 6.9e-59 231.1 188 66.5
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 9.1e-59 230.7 189 68.3
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 1.2e-58 230.3 196 65.3
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.9e-56 223.0 196 63.3
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 2.5e-56 222.6 191 64.4
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 2.5e-56 222.6 191 64.4
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 4.2e-56 221.9 189 61.9
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 2.1e-55 219.5 187 72.7
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 2.7e-55 219.2 197 63.5
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 6.1e-55 218.0 188 63.8
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.0e-54 217.2 186 62.4
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.4e-54 216.9 187 64.2
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 3.9e-54 215.3 194 62.9
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 1.5e-53 213.4 189 64.0
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.5e-53 213.4 189 64.0
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.5e-53 213.4 189 64.0
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 2.0e-53 213.0 201 67.2
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 2.6e-53 212.6 189 64.6
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 9.7e-53 210.7 187 62.6
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 4.8e-52 208.4 187 62.0
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 8.2e-52 207.6 186 61.3
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.1e-51 207.2 194 62.9
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 5.3e-51 204.9 187 66.3
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 5.3e-51 204.9 190 64.2
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.5e-50 201.8 187 65.8
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 1.0e-49 200.7 194 58.8
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 2.2e-49 199.5 197 59.9
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 5.0e-49 198.4 187 59.4
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 6.5e-49 198.0 187 60.4
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.4e-48 196.8 189 58.2
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 5.5e-48 194.9 200 60.0
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 9.4e-48 194.1 190 59.5
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 1.2e-47 193.7 171 63.2
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.6e-47 193.4 194 61.9
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 3.6e-47 192.2 188 67.0
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 6.1e-47 191.4 194 54.1
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 3.0e-46 189.1 195 59.0
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 6.7e-46 188.0 191 61.8
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 2.0e-45 186.4 197 57.4
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 7.4e-45 184.5 188 54.8
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 2.8e-44 182.6 188 56.4
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 6.3e-44 181.4 192 57.3
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 8.2e-44 181.0 188 55.9
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 8.2e-44 181.0 188 55.9
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.8e-43 179.9 206 56.3
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 1.8e-43 179.9 189 53.4
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.8e-43 179.9 209 55.0
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 5.3e-43 178.3 187 56.7
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 9.1e-43 177.6 198 54.5
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.2e-42 177.2 192 56.8
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 2.0e-42 176.4 191 58.1
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 2.6e-42 176.0 190 55.8
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 2.6e-42 176.0 193 56.5
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 3.5e-42 175.6 189 56.6
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 4.5e-42 175.3 192 52.6
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 7.7e-42 174.5 197 50.8
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 1.3e-41 173.7 191 56.0
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.2e-41 172.9 188 53.7
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 3.8e-41 172.2 190 52.6
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 3.8e-41 172.2 188 52.7
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.8e-41 172.2 201 55.7
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 8.5e-41 171.0 123 69.9
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.1e-40 170.6 198 51.5
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.9e-40 169.9 207 52.2
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 1.6e-39 166.8 196 52.6
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.6e-39 166.8 209 55.5
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 2.7e-39 166.0 188 55.9
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 6.1e-39 164.9 193 51.3
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 8.0e-39 164.5 187 51.9
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.4e-38 163.7 192 52.6
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 1.8e-38 163.3 215 50.7
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 1.8e-38 163.3 190 58.4
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 5.2e-38 161.8 196 52.0
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 6.7e-38 161.4 199 53.3
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 1.2e-37 160.6 193 52.3
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 1.2e-37 160.6 192 50.5
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 2.0e-37 159.8 187 54.0
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 2.6e-37 159.5 205 46.3
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 3.3e-37 159.1 198 50.0
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 3.3e-37 159.1 186 51.1
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 4.4e-37 158.7 198 54.0
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 7.5e-37 157.9 189 55.0
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 9.7e-37 157.5 198 50.0
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 9.7e-37 157.5 198 50.0
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 2.2e-36 156.4 194 53.6
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 3.7e-36 155.6 193 51.8
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 6.3e-36 154.8 183 50.8
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 6.3e-36 154.8 194 53.6
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 1.8e-35 153.3 194 50.5
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 1.8e-35 153.3 194 50.5
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 2.4e-35 152.9 194 53.1
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 2.4e-35 152.9 224 48.7
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 2.4e-35 152.9 194 53.1
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 2.4e-35 152.9 194 53.1
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 3.1e-35 152.5 197 49.7
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 4.1e-35 152.1 219 47.9
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 4.1e-35 152.1 219 47.9
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.6e-34 150.2 207 48.3
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 5.9e-34 148.3 187 56.7
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 7.7e-34 147.9 190 55.8
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 7.7e-34 147.9 222 47.3
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.0e-33 147.5 202 47.5
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 1.7e-33 146.7 190 55.8
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 3.8e-33 145.6 208 47.1
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 9.4e-32 141.0 206 51.9
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 6.1e-31 138.3 208 47.1
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 6.1e-31 138.3 208 42.8
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 4.4e-29 132.1 199 43.2
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 8.3e-28 127.9 187 46.0
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 1.1e-27 127.5 190 43.2
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 5.0e-25 118.6 84 64.3
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.9e-24 116.7 190 41.6
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 4.2e-24 115.5 152 52.6
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.5e-21 107.1 186 40.9
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 4.4e-21 105.5 186 38.2
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 2.4e-19 99.8 81 71.6
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 3.1e-19 99.4 173 37.6
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 3.5e-18 95.9 91 61.5
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 5.9e-18 95.1 73 68.5
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 5.9e-18 95.1 68 66.2
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 5.9e-18 95.1 203 37.9
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 7.8e-18 94.7 193 35.8
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 4.0e-14 82.4 163 36.2
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 2.0e-13 80.1 183 35.0
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.7e-12 77.0 38 86.8
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 2.2e-12 76.6 183 32.8
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 1.9e-11 73.6 183 32.2
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 3.2e-11 72.8 183 31.7
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 5.4e-11 72.0 183 30.6
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 1.6e-10 70.5 183 30.1
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 7.8e-10 68.2 183 30.1
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 1.3e-09 67.4 157 40.1
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 1.7e-09 67.0 187 30.5
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 2.3e-09 66.6 192 28.1
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 5.0e-09 65.5 186 33.3
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 8.6e-09 64.7 189 28.6
SEGI_29499 Sequoiadendron giganteum HOM05D036824 ORTHO05D006087 8.6e-09 64.7 197 27.4
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 8.6e-09 64.7 184 29.9
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 1.1e-08 64.3 183 29.0
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 2.5e-08 63.2 187 29.9
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 7.3e-08 61.6 186 31.2
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 9.5e-08 61.2 189 27.5
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 1.2e-07 60.8 187 31.6
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 1.2e-07 60.8 187 31.6
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 1.2e-07 60.8 186 29.0
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 1.6e-07 60.5 187 30.5
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 2.1e-07 60.1 187 34.2
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 2.8e-07 59.7 187 29.9
Cpa.g.sc25.199 Carica papaya HOM05D008031 ORTHO05D010063 2.8e-07 59.7 183 30.1
QL05p000882 Quercus lobata HOM05D008031 ORTHO05D010063 3.6e-07 59.3 183 26.2
QL05p001111 Quercus lobata HOM05D008031 ORTHO05D010063 3.6e-07 59.3 183 26.2
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.8e-06 57.0 187 33.7
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 2.3e-06 56.6 188 29.8
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 3.1e-06 56.2 190 28.9
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 3.1e-06 56.2 183 29.5
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 3.1e-06 56.2 187 33.2
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 4.0e-06 55.8 183 30.1
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 5.2e-06 55.5 195 29.7
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 6.8e-06 55.1 186 27.4


User provided reference genes

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