Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 0.0e+00 1426.8 704 100.0
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 5.1e-288 994.2 707 71.4
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 1.1e-287 993.0 687 74.4
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 7.4e-271 937.2 855 60.1
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 7.2e-242 840.9 698 63.3
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 8.9e-240 833.9 696 63.1
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 2.6e-239 832.4 679 65.7
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 4.3e-234 815.1 683 63.7
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 8.0e-233 810.8 694 63.8
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 6.8e-232 807.7 677 63.5
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 3.4e-231 805.4 673 64.5
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 8.3e-230 800.8 669 64.0
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 1.9e-229 799.7 697 62.0
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 3.2e-229 798.9 700 62.1
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 3.0e-227 792.3 700 62.6
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.6e-226 788.1 675 61.9
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.6e-225 786.6 692 61.0
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.1e-224 783.9 700 62.3
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 1.1e-224 783.9 681 63.4
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.0e-223 779.6 700 62.1
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.6e-223 779.2 700 62.3
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 2.9e-222 775.8 681 62.8
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 3.7e-222 775.4 686 62.8
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 9.2e-221 770.8 690 60.4
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 6.6e-219 764.6 680 61.9
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 4.7e-217 758.4 679 61.6
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 7.1e-213 744.6 682 58.9
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 1.7e-211 740.0 695 58.7
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 9.5e-210 734.2 682 58.9
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 1.6e-209 733.4 641 60.7
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 3.6e-209 732.3 689 58.9
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 2.4e-208 729.6 696 58.5
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 5.2e-208 728.4 680 57.9
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 4.4e-207 725.3 679 60.1
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 6.4e-206 721.5 687 57.2
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 8.4e-206 721.1 689 58.1
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 4.2e-205 718.8 687 57.1
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 4.6e-204 715.3 693 58.6
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 3.0e-203 712.6 742 55.4
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 6.6e-203 711.4 712 56.7
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 3.4e-199 699.1 675 57.0
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 1.4e-197 693.7 697 57.1
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 1.6e-196 690.3 683 57.0
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 4.6e-196 688.7 703 57.5
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 1.7e-195 686.8 670 56.1
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 5.1e-195 685.3 724 54.1
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 1.1e-194 684.1 731 54.0
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 9.6e-194 681.0 678 57.4
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 1.3e-193 680.6 683 57.0
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 1.1e-192 677.6 699 55.5
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 2.4e-192 676.4 693 55.4
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 6.9e-192 674.9 734 54.1
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 5.1e-187 658.7 592 60.6
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 1.5e-186 657.1 617 58.7
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 1.9e-186 656.8 681 55.1
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 2.5e-186 656.4 688 54.2
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 7.6e-183 644.8 624 58.7
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 2.2e-182 643.3 685 54.0
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 3.8e-182 642.5 694 53.7
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 6.4e-182 641.7 679 53.9
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 1.1e-181 641.0 721 52.8
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 3.2e-181 639.4 669 54.4
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 4.2e-181 639.0 703 53.8
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 1.3e-179 634.0 691 53.3
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 2.3e-179 633.3 680 54.1
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 3.0e-179 632.9 664 54.1
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 4.3e-178 629.0 680 54.0
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 9.6e-178 627.9 678 53.4
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 3.7e-177 625.9 702 53.4
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 9.0e-176 621.3 665 55.0
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 3.4e-175 619.4 701 52.4
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 3.8e-174 615.9 666 54.5
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 6.5e-174 615.1 672 54.0
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 8.4e-174 614.8 665 53.7
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 8.4e-174 614.8 606 57.4
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 1.2e-172 610.9 686 52.0
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 3.9e-171 605.9 644 55.0
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 1.5e-170 604.0 667 53.5
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 1.9e-170 603.6 589 56.9
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 1.9e-170 603.6 691 52.8
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 3.3e-170 602.8 668 53.9
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 4.3e-170 602.4 691 51.7
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 1.1e-168 597.8 668 53.4
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 2.4e-168 596.7 668 53.4
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 5.3e-168 595.5 672 53.6
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 6.9e-168 595.1 669 54.0
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 9.0e-168 594.7 669 54.0
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 7.7e-167 591.7 704 50.0
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 1.0e-166 591.3 625 53.9
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.4e-165 587.4 682 51.0
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 1.9e-165 587.0 686 50.7
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 5.5e-165 585.5 683 51.8
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 5.5e-165 585.5 678 52.2
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 4.6e-164 582.4 695 50.2
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 1.1e-162 577.8 669 51.9
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 9.7e-162 574.7 669 51.7
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 1.4e-160 570.9 669 51.4
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 9.1e-160 568.2 721 48.8
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 4.5e-159 565.8 668 50.6
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 4.5e-159 565.8 714 49.2
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 2.2e-158 563.5 671 49.8
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 1.2e-156 557.8 670 50.7
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 3.6e-156 556.2 706 49.3
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.8e-155 553.9 642 50.6
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.6e-154 550.1 680 49.1
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 2.2e-153 547.0 671 50.2
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 8.0e-148 528.5 681 50.1
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 2.0e-146 523.9 624 49.8
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 8.8e-139 498.4 672 49.0
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 2.2e-134 483.8 638 47.6
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 5.0e-134 482.6 795 42.1
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 1.2e-127 461.5 676 43.3
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 9.5e-125 451.8 639 44.4
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 3.4e-122 443.4 661 43.6
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.0e-119 434.1 489 51.3
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 1.4e-115 421.4 692 40.6
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 1.6e-111 407.9 415 54.9
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 6.6e-110 402.5 609 42.7
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 7.8e-103 379.0 726 37.3
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 3.8e-89 333.6 595 38.2
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 3.0e-78 297.4 724 34.0
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 1.8e-75 288.1 597 35.3
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 4.9e-73 280.0 688 34.2
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 9.3e-72 275.8 654 33.8
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 6.0e-71 273.1 315 50.5
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 3.1e-51 207.6 243 51.4
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.2e-49 201.4 222 53.6
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 6.5e-49 199.9 179 61.5
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 4.2e-48 197.2 480 33.1
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 5.5e-48 196.8 185 60.0
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 2.0e-34 151.8 745 27.0
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 7.7e-34 149.8 130 61.5
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 6.3e-28 130.2 97 70.1
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 1.8e-27 128.6 147 51.0
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 5.3e-27 127.1 635 25.7
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 2.6e-21 108.2 105 52.4
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.1e-11 76.3 103 45.6
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 1.8e-11 75.5 85 47.1
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 6.6e-09 67.0 59 52.5
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.1e-08 66.2 68 58.8
CSS0012295 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 4.3e-08 64.3 95 47.4
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 7.2e-08 63.5 129 33.3
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 7.2e-08 63.5 129 33.3
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 7.2e-08 63.5 129 33.3
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 3.0e-06 58.2 63 42.9
Zm00001eb139230 Zea mays HOM05D005204 ORTHO05D006037 4.0e-06 57.8 125 31.2


User provided reference genes

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