Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 2.1e-93 346.3 261 100.0
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 3.4e-80 302.4 262 92.0
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 2.5e-75 286.2 262 88.9
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 1.3e-74 283.9 262 82.1
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 3.7e-74 282.3 194 83.5
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 1.8e-73 280.0 194 84.5
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 4.5e-72 275.4 193 79.3
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 1.3e-71 273.9 186 80.1
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 1.9e-70 270.0 193 88.1
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 1.9e-70 270.0 149 96.0
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.9e-70 270.0 195 80.0
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 2.5e-70 269.6 195 82.6
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.5e-70 269.6 195 82.6
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 3.2e-70 269.2 197 84.3
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 1.2e-69 267.3 197 81.7
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 1.6e-69 266.9 197 85.3
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 3.6e-69 265.8 191 82.7
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 6.1e-69 265.0 261 83.9
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.0e-68 264.2 194 86.1
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 5.1e-68 261.9 198 76.3
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.1e-67 260.8 201 78.1
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 9.7e-67 257.7 194 79.4
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 9.7e-67 257.7 152 89.5
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.3e-66 257.3 190 85.8
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 2.2e-66 256.5 194 85.6
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 8.2e-66 254.6 193 85.5
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 1.1e-65 254.2 196 84.7
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 1.8e-65 253.4 196 76.5
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 4.1e-65 252.3 152 86.8
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 7.0e-65 251.5 194 84.5
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 7.0e-65 251.5 192 85.9
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 9.1e-65 251.1 195 85.1
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 1.2e-64 250.8 195 80.0
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 1.6e-64 250.4 192 84.4
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.6e-64 250.4 192 82.8
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 2.0e-64 250.0 149 87.9
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 2.0e-64 250.0 195 82.1
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 5.9e-64 248.4 148 87.2
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.9e-64 248.4 193 83.4
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 7.7e-64 248.1 264 78.0
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 1.3e-63 247.3 263 77.2
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 1.3e-63 247.3 195 80.5
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.7e-63 246.9 190 84.2
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.8e-63 245.7 191 83.8
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 5.0e-63 245.4 194 82.0
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 1.1e-62 244.2 154 86.4
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.1e-62 244.2 187 84.5
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 1.1e-62 244.2 185 73.5
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 1.9e-62 243.4 152 83.6
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 2.5e-62 243.0 194 81.4
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 3.2e-62 242.7 145 87.6
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 4.2e-62 242.3 149 85.2
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 5.5e-62 241.9 194 80.4
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 7.2e-62 241.5 182 79.7
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 7.2e-62 241.5 194 83.5
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 9.4e-62 241.1 152 85.5
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 1.2e-61 240.7 154 85.7
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 2.1e-61 240.0 152 83.6
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 2.1e-61 240.0 198 72.7
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.1e-61 240.0 199 80.4
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 2.7e-61 239.6 154 85.1
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 3.6e-61 239.2 152 82.9
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 4.7e-61 238.8 150 86.7
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 1.4e-60 237.3 153 86.3
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 4.0e-60 235.7 153 81.7
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 5.2e-60 235.3 197 79.2
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 5.2e-60 235.3 152 83.6
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 5.2e-60 235.3 196 77.6
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 8.8e-60 234.6 143 88.1
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.1e-59 234.2 145 85.5
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.5e-59 233.8 153 81.7
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 1.5e-59 233.8 150 85.3
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 2.0e-59 233.4 197 79.2
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 3.3e-59 232.6 191 77.0
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 4.4e-59 232.3 145 86.9
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 5.7e-59 231.9 151 84.1
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 7.5e-59 231.5 152 81.6
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 1.3e-58 230.7 154 82.5
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 3.7e-58 229.2 145 85.5
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 3.7e-58 229.2 184 70.7
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 1.1e-57 227.6 154 82.5
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 1.8e-57 226.9 155 80.6
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 4.1e-57 225.7 149 80.5
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 4.1e-57 225.7 151 80.8
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 5.3e-57 225.3 134 89.6
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 7.0e-57 224.9 133 89.5
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 7.0e-57 224.9 154 83.1
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 9.1e-57 224.6 133 88.7
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 9.1e-57 224.6 145 82.1
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 9.1e-57 224.6 145 82.1
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 1.2e-56 224.2 188 70.2
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 2.0e-56 223.4 138 87.0
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 2.0e-56 223.4 149 81.9
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 2.0e-56 223.4 152 82.2
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 3.5e-56 222.6 151 82.8
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 4.5e-56 222.2 149 83.2
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 5.9e-56 221.9 149 82.6
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 7.7e-56 221.5 184 78.8
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 7.7e-56 221.5 186 71.5
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.0e-55 221.1 195 77.4
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.0e-55 221.1 195 77.4
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 1.0e-55 221.1 141 84.4
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 2.2e-55 219.9 150 78.7
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 2.9e-55 219.5 151 82.1
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 2.9e-55 219.5 151 82.1
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 3.8e-55 219.2 153 80.4
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 3.8e-55 219.2 153 80.4
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 1.1e-54 217.6 150 80.7
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 1.5e-54 217.2 133 87.2
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 1.5e-54 217.2 145 84.1
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 2.5e-54 216.5 148 81.1
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 2.5e-54 216.5 148 81.1
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 5.5e-54 215.3 150 80.0
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 5.5e-54 215.3 150 80.0
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 5.5e-54 215.3 157 78.3
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 7.2e-54 214.9 155 77.4
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 7.2e-54 214.9 143 82.5
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 7.2e-54 214.9 143 82.5
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 9.4e-54 214.5 148 81.8
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 9.4e-54 214.5 130 89.2
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 1.2e-53 214.2 197 76.1
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 1.2e-53 214.2 195 75.4
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 8.0e-53 211.5 148 80.4
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 8.0e-53 211.5 148 80.4
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 3.4e-51 206.1 197 74.6
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 7.5e-51 204.9 148 74.3
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 2.2e-50 203.4 148 73.6
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 2.9e-47 193.0 147 70.7
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 3.8e-47 192.6 138 76.8
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 1.9e-46 190.3 142 75.4
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 1.0e-44 184.5 130 75.4
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 2.3e-44 183.3 136 75.7
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 2.3e-44 183.3 156 71.8
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 5.2e-44 182.2 201 64.2
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 6.3e-42 175.3 138 68.1
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.7e-40 169.9 115 85.2
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 3.8e-39 166.0 130 68.5
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.0e-36 157.9 121 75.2
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 1.7e-31 140.6 135 63.0
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 1.1e-30 137.9 109 65.1
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 1.1e-30 137.9 128 60.9
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 2.5e-30 136.7 92 85.9
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 3.3e-30 136.3 109 69.7
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 3.1e-28 129.8 196 57.7
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.4e-25 120.2 113 62.8
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 9.2e-25 118.2 137 52.6
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 2.7e-24 116.7 141 51.8
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.3e-23 114.4 80 68.8
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 2.5e-22 110.2 141 51.8
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 1.1e-20 104.8 81 77.8
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 1.1e-20 104.8 81 77.8
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 2.0e-19 100.5 84 71.4
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 6.0e-16 89.0 64 82.8
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 7.8e-16 88.6 66 81.8
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 7.8e-16 88.6 72 72.2
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 8.4e-10 68.6 39 84.6
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 6.6e-07 58.9 59 45.8


User provided reference genes

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