Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.9e-51 205.7 112 100.0
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.4e-46 188.7 112 90.2
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 2.9e-44 181.8 112 87.5
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 1.4e-43 179.5 112 87.5
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 1.9e-43 179.1 112 87.5
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 2.5e-43 178.7 112 88.4
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 3.2e-43 178.3 112 87.5
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 3.2e-43 178.3 112 87.5
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 4.2e-43 177.9 112 86.6
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 5.5e-43 177.6 112 86.6
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 1.2e-42 176.4 112 86.6
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 1.2e-42 176.4 112 86.6
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 84.8
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 87.5
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 85.7
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 2.7e-42 175.3 112 85.7
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 2.7e-42 175.3 112 85.7
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 3.6e-42 174.9 112 85.7
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 3.6e-42 174.9 109 86.2
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 4.6e-42 174.5 112 87.5
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 7.9e-42 173.7 110 84.5
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 1.8e-41 172.6 112 86.6
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 2.3e-41 172.2 112 83.9
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 2.3e-41 172.2 112 83.9
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 2.3e-41 172.2 112 83.9
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 3.9e-41 171.4 112 84.8
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 5.1e-41 171.0 112 84.8
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 8.7e-41 170.2 109 85.3
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 1.1e-40 169.9 113 80.5
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.5e-40 169.5 112 83.9
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 3.3e-40 168.3 109 84.4
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 5.7e-40 167.5 107 86.0
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 5.7e-40 167.5 112 83.9
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 5.7e-40 167.5 112 83.0
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 5.7e-40 167.5 112 83.9
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 9.7e-40 166.8 112 80.4
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 9.7e-40 166.8 112 83.9
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 2.2e-39 165.6 112 83.9
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 2.2e-39 165.6 107 85.0
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 2.2e-39 165.6 110 83.6
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 2.2e-39 165.6 112 82.1
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 2.8e-39 165.2 110 83.6
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 3.7e-39 164.9 107 83.2
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 4.8e-39 164.5 107 84.1
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 6.3e-39 164.1 112 82.1
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 8.2e-39 163.7 128 75.8
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 1.1e-38 163.3 110 84.5
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.4e-38 162.9 110 81.8
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 1.8e-38 162.5 110 83.6
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 1.8e-38 162.5 107 83.2
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 3.1e-38 161.8 112 81.2
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 3.1e-38 161.8 107 82.2
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.1e-38 161.4 107 82.2
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 4.1e-38 161.4 112 79.5
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 5.3e-38 161.0 107 82.2
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 5.3e-38 161.0 107 82.2
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 5.3e-38 161.0 107 82.2
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 6.9e-38 160.6 112 81.2
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 6.9e-38 160.6 112 79.5
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 6.9e-38 160.6 112 82.1
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 6.9e-38 160.6 112 82.1
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 6.9e-38 160.6 112 82.1
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 6.9e-38 160.6 107 82.2
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 6.9e-38 160.6 112 79.5
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 6.9e-38 160.6 112 79.5
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 6.9e-38 160.6 112 79.5
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 6.9e-38 160.6 107 82.2
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 9.1e-38 160.2 110 81.8
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 1.2e-37 159.8 105 84.8
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.0e-37 159.1 107 81.3
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.0e-37 159.1 112 76.8
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 2.6e-37 158.7 134 70.1
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 1.0e-36 156.8 105 84.8
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 1.3e-36 156.4 110 78.2
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 1.3e-36 156.4 112 76.8
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 1.7e-36 156.0 110 77.3
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 1.7e-36 156.0 110 77.3
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 2.2e-36 155.6 110 76.4
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 2.2e-36 155.6 112 76.8
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 2.2e-36 155.6 112 76.8
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 2.2e-36 155.6 102 83.3
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 2.9e-36 155.2 99 85.9
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 2.9e-36 155.2 107 80.4
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 3.8e-36 154.8 110 77.3
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 3.8e-36 154.8 110 76.4
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 3.8e-36 154.8 103 78.6
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 5.0e-36 154.5 107 78.5
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 5.0e-36 154.5 107 78.5
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 8.5e-36 153.7 110 79.1
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 1.1e-35 153.3 105 78.1
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.5e-35 152.1 112 79.5
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.5e-35 152.1 112 79.5
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 2.5e-35 152.1 110 76.4
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 75.5
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 3.2e-35 151.8 112 76.8
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 75.5
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 5.5e-35 151.0 110 74.5
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 5.5e-35 151.0 110 74.5
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 5.5e-35 151.0 110 74.5
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 5.5e-35 151.0 110 74.5
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 7.2e-35 150.6 109 78.9
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 9.4e-35 150.2 110 74.5
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 9.4e-35 150.2 99 78.8
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 1.6e-34 149.4 100 79.0
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 2.1e-34 149.1 110 73.6
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 2.7e-34 148.7 112 76.8
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 7.9e-34 147.1 111 74.8
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 1.0e-33 146.7 110 72.7
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 1.8e-33 146.0 112 76.8
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 8.8e-33 143.7 101 76.2
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 8.8e-33 143.7 108 75.0
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 1.5e-32 142.9 112 69.6
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 2.0e-32 142.5 112 75.0
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 7.4e-32 140.6 112 71.4
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.7e-31 139.4 97 78.4
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 6.3e-31 137.5 112 71.4
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.1e-30 136.7 100 79.0
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 1.1e-30 136.7 112 71.4
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.1e-30 136.7 114 71.9
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.8e-30 136.0 97 74.2
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 3.1e-30 135.2 109 71.6
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.5e-29 132.9 112 68.8
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 2.6e-29 132.1 98 76.5
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.0e-28 130.2 109 71.6
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 5.0e-28 127.9 101 70.3
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.5e-27 125.6 175 49.7
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 4.2e-27 124.8 85 80.0
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 8.0e-26 120.6 101 67.3
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 1.8e-25 119.4 105 65.7
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 5.2e-25 117.9 96 65.6
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 1.1e-24 116.7 80 82.5
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 7.4e-24 114.0 101 65.3
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 1.1e-22 110.2 110 58.2
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.5e-19 99.8 68 82.4
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 2.3e-17 92.4 60 81.7
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 7.5e-16 87.4 93 58.1
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 2.8e-15 85.5 110 50.0
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 1.8e-14 82.8 57 75.4
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 3.1e-14 82.0 59 76.3
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 5.3e-14 81.3 62 69.4
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 7.0e-14 80.9 50 86.0
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 1.6e-13 79.7 62 72.6
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 2.5e-11 72.4 56 69.6
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 9.4e-11 70.5 52 71.2
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 1.8e-06 56.2 102 39.2


User provided reference genes

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