Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.0e-102 375.2 190 100.0
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 1.6e-55 219.9 199 65.3
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.4e-54 216.9 204 64.2
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 3.1e-54 215.7 210 62.9
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 3.1e-54 215.7 204 63.7
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 5.3e-54 214.9 206 63.1
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 9.0e-54 214.2 203 63.1
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.2e-53 213.8 198 64.1
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.5e-53 213.4 202 61.9
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-53 213.0 204 63.2
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 2.6e-53 212.6 206 62.6
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 7.6e-53 211.1 198 63.1
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 1.3e-52 210.3 209 61.2
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.2e-52 209.5 202 61.4
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 2.2e-52 209.5 202 61.4
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 3.8e-52 208.8 209 60.3
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 3.8e-52 208.8 205 62.0
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 4.9e-52 208.4 201 60.2
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 8.4e-52 207.6 206 59.2
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 8.4e-52 207.6 209 60.3
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 1.1e-51 207.2 212 57.5
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.4e-51 206.8 204 59.8
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.4e-51 206.8 211 59.7
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 1.9e-51 206.5 205 59.0
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 2.4e-51 206.1 206 61.2
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.4e-51 206.1 204 60.3
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 4.2e-51 205.3 205 60.5
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 4.2e-51 205.3 200 61.0
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 4.2e-51 205.3 204 60.3
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 4.2e-51 205.3 204 60.3
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 5.4e-51 204.9 206 59.7
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 7.1e-51 204.5 209 58.9
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 9.3e-51 204.1 209 59.3
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.2e-50 203.8 204 59.3
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.2e-50 203.8 204 59.3
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.2e-50 203.8 211 57.8
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 1.2e-50 203.8 198 61.1
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.2e-50 203.8 203 60.6
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.2e-50 203.8 204 59.3
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.6e-50 203.4 199 60.3
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.6e-50 203.4 204 58.8
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.6e-50 203.4 222 56.8
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 1.6e-50 203.4 211 57.8
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 2.1e-50 203.0 198 61.1
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.1e-50 203.0 211 59.7
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 2.1e-50 203.0 197 60.9
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 2.7e-50 202.6 200 60.0
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.7e-50 202.6 214 59.3
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 3.5e-50 202.2 204 59.3
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 7.9e-50 201.1 211 57.8
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 7.9e-50 201.1 204 58.8
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.0e-49 200.7 204 60.8
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 1.0e-49 200.7 206 59.2
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.7e-49 199.9 211 58.3
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 2.3e-49 199.5 204 58.3
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.0e-49 199.1 205 57.6
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 3.9e-49 198.7 211 56.4
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 8.7e-49 197.6 199 58.8
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 8.7e-49 197.6 205 60.5
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.1e-48 197.2 198 59.1
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.5e-48 196.1 208 56.2
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 2.5e-48 196.1 208 56.2
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 3.3e-48 195.7 218 55.0
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.3e-48 195.7 224 53.6
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.3e-48 194.5 205 56.1
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.3e-47 193.7 208 55.8
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.6e-47 193.4 212 55.2
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.6e-47 193.4 203 57.6
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.6e-47 193.4 207 56.5
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 1.6e-47 193.4 205 58.0
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.1e-47 193.0 205 56.1
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.1e-47 193.0 224 52.7
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 2.1e-47 193.0 203 58.1
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 2.8e-47 192.6 224 57.1
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 3.6e-47 192.2 212 55.2
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.6e-47 192.2 198 57.1
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 6.2e-47 191.4 207 54.6
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 8.1e-47 191.0 195 56.9
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 8.1e-47 191.0 199 57.3
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.4e-46 190.3 205 55.6
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.4e-46 190.3 197 56.3
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.4e-46 190.3 232 52.2
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 3.1e-46 189.1 211 55.5
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 4.0e-46 188.7 207 55.1
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 5.3e-46 188.3 200 56.5
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 6.9e-46 188.0 195 57.4
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 6.9e-46 188.0 196 57.7
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 9.0e-46 187.6 206 54.4
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.2e-45 187.2 207 54.6
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 1.5e-45 186.8 195 55.9
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.0e-45 186.4 207 54.6
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 4.5e-45 185.3 207 54.6
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 5.8e-45 184.9 202 54.5
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 7.6e-45 184.5 203 53.2
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.7e-44 183.3 195 54.9
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.7e-44 183.3 195 54.9
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.7e-44 183.3 201 55.2
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.7e-44 183.3 251 49.4
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 3.8e-44 182.2 195 54.4
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 3.8e-44 182.2 195 54.4
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 4.9e-44 181.8 208 52.9
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 8.4e-44 181.0 195 54.4
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 8.4e-44 181.0 195 53.8
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 8.4e-44 181.0 201 55.2
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.1e-43 180.6 197 53.8
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.1e-43 180.6 197 53.8
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.1e-43 180.6 197 53.8
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.1e-43 180.6 197 53.8
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.4e-43 180.3 197 56.3
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.4e-43 180.3 232 48.3
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.9e-43 179.9 212 53.3
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 3.9e-41 172.2 178 60.7
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 3.7e-39 165.6 183 56.3
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 3.1e-38 162.5 169 55.6
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 5.3e-38 161.8 209 48.8
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.2e-37 160.6 183 54.6
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 1.2e-37 160.6 160 59.4
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 7.6e-37 157.9 197 47.2
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.0e-36 157.5 162 57.4
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.7e-36 156.8 160 58.1
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 2.2e-36 156.4 211 50.7
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-35 153.7 204 51.0
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 1.6e-34 150.2 154 57.1
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 4.6e-34 148.7 192 47.4
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 9.6e-32 141.0 155 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.4e-30 137.1 197 41.1
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 9.0e-30 134.4 196 43.9
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.4e-29 132.5 145 54.5
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.1e-27 127.5 141 55.3
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 7.9e-26 121.3 142 50.7
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.3e-25 120.6 148 51.4
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.3e-25 120.6 89 75.3
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.3e-24 115.5 126 54.8
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 5.7e-24 115.2 135 52.6
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 4.8e-23 112.1 77 77.9
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 8.2e-23 111.3 101 61.4
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 8.2e-23 111.3 119 57.1
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 3.1e-22 109.4 126 52.4
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.7e-21 104.8 134 48.5
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-19 100.9 88 62.5
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 2.5e-19 99.8 102 56.9
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-17 94.0 125 47.2
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.8e-17 91.3 86 59.3
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.8e-15 86.3 60 68.3
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.7e-15 85.9 83 60.2
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 3.7e-15 85.9 194 32.0
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-14 84.3 55 74.5
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 5.0e-12 75.5 181 28.2
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 8.5e-12 74.7 205 24.9
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.4e-11 73.9 45 73.3
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 5.5e-11 72.0 177 27.1
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 9.4e-11 71.2 121 41.3
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.6e-10 69.3 115 41.7
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 4.7e-10 68.9 115 43.5
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 4.7e-10 68.9 115 43.5
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.8e-09 67.0 115 42.6
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.3e-09 66.6 115 42.6
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 3.0e-09 66.2 88 42.0
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 4.4e-08 62.4 100 44.0
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 4.4e-08 62.4 126 38.9


User provided reference genes

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