Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.3e-296 1022.3 512 100.0
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.2e-240 835.5 509 82.3
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 4.8e-227 791.2 509 76.8
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.9e-220 769.2 510 75.3
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 5.7e-220 767.7 509 74.3
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 9.7e-220 766.9 514 74.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 6.9e-218 760.8 512 75.6
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 4.5e-217 758.1 515 73.2
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.0e-216 756.9 512 73.2
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 2.2e-216 755.7 512 74.2
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 1.1e-215 753.4 512 72.7
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.9e-215 752.7 512 73.2
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.2e-215 751.5 515 72.8
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 5.5e-215 751.1 512 73.6
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.2e-214 750.0 513 73.1
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.2e-214 750.0 515 72.8
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.2e-214 750.0 514 74.1
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 1.1e-212 743.4 515 72.6
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.1e-212 743.4 523 71.9
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.1e-212 743.4 510 72.9
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 3.3e-212 741.9 512 71.7
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 4.3e-212 741.5 513 72.9
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 8.2e-211 737.3 535 70.1
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 6.9e-210 734.2 509 72.1
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.0e-208 730.3 510 70.8
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 2.2e-208 729.2 524 70.8
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 3.8e-208 728.4 513 71.9
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 6.5e-208 727.6 510 70.4
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.9e-207 726.1 510 69.8
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 7.2e-207 724.2 509 69.5
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.2e-206 723.4 510 69.2
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 2.1e-206 722.6 511 69.9
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.7e-206 721.5 511 69.5
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 4.7e-206 721.5 513 70.8
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.3e-205 719.2 511 69.5
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 3.9e-205 718.4 594 63.6
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 6.7e-205 717.6 511 69.5
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 2.0e-204 716.1 510 69.0
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 4.4e-204 714.9 510 68.2
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 4.4e-204 714.9 511 69.3
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.7e-204 714.5 512 69.9
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.7e-204 714.5 512 69.9
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.7e-204 714.5 512 68.9
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 7.4e-204 714.1 512 69.3
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 6.3e-203 711.1 513 69.2
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.4e-202 709.9 517 69.6
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 3.1e-202 708.8 512 68.2
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.0e-201 706.1 510 68.4
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 2.0e-201 706.1 510 67.3
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.0e-200 703.7 510 67.8
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.0e-200 703.7 574 63.9
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.5e-199 699.9 513 68.4
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 9.4e-199 697.2 512 67.4
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 2.3e-197 692.6 515 67.8
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.5e-196 689.9 513 68.0
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 9.7e-196 687.2 514 66.3
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.6e-193 679.9 515 67.2
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.6e-193 679.9 512 67.4
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 2.7e-193 679.1 520 66.0
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 5.9e-193 677.9 512 66.8
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.0e-192 677.2 513 67.3
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.3e-192 676.8 512 66.8
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 1.3e-192 676.8 506 66.8
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 5.0e-192 674.9 512 66.4
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 5.5e-191 671.4 512 66.0
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 8.0e-190 667.5 548 62.8
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 8.0e-190 667.5 501 69.5
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.8e-189 666.4 512 65.6
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 3.0e-189 665.6 521 64.7
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 4.0e-189 665.2 510 65.7
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 6.8e-189 664.5 514 65.8
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 6.8e-189 664.5 512 65.2
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 8.8e-189 664.1 510 65.5
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.2e-188 663.7 512 64.5
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.2e-188 663.7 510 65.7
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 2.0e-188 662.9 512 65.6
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 4.4e-188 661.8 513 65.5
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 4.4e-188 661.8 510 65.9
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 7.5e-188 661.0 511 65.0
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 9.8e-188 660.6 513 65.5
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 2.2e-187 659.4 514 66.0
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 3.7e-187 658.7 510 64.9
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 4.8e-187 658.3 432 72.7
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 6.3e-187 657.9 462 69.7
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 6.3e-187 657.9 514 64.8
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 1.1e-186 657.1 511 65.9
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 9.1e-186 654.1 511 65.2
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.0e-184 650.6 511 65.2
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 2.9e-184 649.0 513 64.3
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 5.0e-184 648.3 439 72.7
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.1e-183 647.1 555 61.6
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.9e-183 646.4 511 65.4
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.9e-183 646.4 508 63.2
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.6e-182 643.3 467 70.7
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 1.0e-181 640.6 494 64.8
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 4.1e-178 628.6 436 70.9
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 7.5e-172 607.8 554 59.2
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 3.7e-171 605.5 495 61.8
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 6.4e-171 604.7 519 59.2
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 8.3e-171 604.4 437 68.4
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.4e-170 603.6 355 84.8
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 8.0e-166 587.8 472 61.7
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 7.5e-164 581.3 433 66.1
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 5.6e-159 565.1 379 74.7
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.1e-157 560.8 467 61.0
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 7.1e-154 548.1 487 56.1
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-152 543.9 371 72.0
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 8.9e-149 531.2 415 65.1
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 4.6e-145 518.8 510 54.5
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.4e-138 495.4 448 58.7
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 2.0e-132 476.9 384 63.0
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.3e-123 447.6 371 60.4
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 7.9e-121 438.3 502 46.6
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 4.3e-119 432.6 470 50.0
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-114 417.9 391 58.1
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.1e-113 413.7 507 46.4
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 2.5e-111 406.8 439 49.0
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.5e-106 389.0 287 65.5
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 4.1e-101 372.9 327 60.2
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 8.0e-81 305.4 689 34.3
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 7.5e-79 298.9 477 37.9
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 5.7e-71 272.7 510 38.6
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 1.6e-68 264.6 461 37.1
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 4.5e-68 263.1 242 57.9
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-58 231.1 163 70.6
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 5.6e-58 229.6 208 57.2
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 3.0e-56 223.8 370 36.2
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 2.9e-54 217.2 501 32.3
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 2.0e-47 194.5 158 68.4
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 6.4e-38 162.9 248 39.9
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.1e-37 162.2 212 40.6
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.1e-34 152.1 102 72.5
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 2.1e-33 147.9 92 77.2
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 8.7e-27 125.9 109 60.6
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.2e-25 122.1 348 26.1
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.5e-15 88.6 65 67.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 9.3e-13 79.3 49 79.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.0e-11 74.3 44 75.0
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-08 65.1 66 59.1


User provided reference genes

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