Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 2.6e-129 466.1 376 100.0
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 4.5e-89 332.4 371 82.5
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 3.7e-83 312.8 372 82.0
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 5.3e-82 308.9 372 81.2
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 7.6e-81 305.1 373 68.6
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 3.8e-80 302.8 373 68.4
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 7.2e-79 298.5 374 74.6
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 9.3e-79 298.1 374 75.7
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 3.3e-76 289.7 373 74.5
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 3.3e-76 289.7 373 76.7
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 7.4e-76 288.5 373 72.9
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 2.4e-74 283.5 372 75.5
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 6.9e-74 282.0 373 66.2
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 9.0e-74 281.6 373 75.9
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 7.7e-73 278.5 373 76.9
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.0e-72 278.1 188 68.1
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 1.3e-72 277.7 373 74.8
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 1.8e-69 267.3 361 75.3
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 5.1e-69 265.8 371 74.1
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 8.8e-69 265.0 372 72.8
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 8.8e-69 265.0 372 72.8
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 3.3e-68 263.1 373 72.1
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 4.3e-68 262.7 373 71.3
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 5.7e-68 262.3 373 73.2
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 1.7e-67 260.8 375 63.5
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.8e-67 260.0 373 71.6
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 2.8e-67 260.0 371 72.8
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.4e-66 257.7 373 69.7
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 3.1e-66 256.5 347 65.7
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 4.1e-66 256.1 371 73.3
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 5.3e-66 255.8 371 74.7
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 5.3e-66 255.8 373 71.0
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 1.5e-65 254.2 371 74.7
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 7.7e-65 251.9 373 71.3
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 2.9e-64 250.0 372 58.3
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 5.0e-64 249.2 371 58.2
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 5.5e-63 245.7 172 67.4
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 1.2e-62 244.6 371 57.4
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 3.6e-62 243.0 174 65.5
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 2.3e-61 240.4 371 70.9
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 3.9e-61 239.6 176 63.6
Glyma.11G253700 Glycine max HOM05D007897 ORTHO05D010061 5.7e-60 235.7 174 63.2
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 1.1e-58 231.5 371 55.0
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.4e-58 231.1 364 71.4
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 1.6e-57 227.6 370 71.6
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 5.9e-57 225.7 373 68.1
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 1.5e-55 221.1 372 67.5
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 3.3e-52 209.9 374 65.2
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 4.4e-52 209.5 164 61.0
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 1.7e-51 207.6 374 63.1
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 1.3e-48 198.0 375 61.1
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 2.5e-47 193.7 185 53.0
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 4.2e-47 193.0 188 52.7
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 4.2e-47 193.0 189 52.4
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 5.5e-47 192.6 373 66.2
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 3.6e-46 189.9 374 59.1
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 4.7e-46 189.5 373 59.8
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 6.1e-46 189.1 373 62.5
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 1.8e-45 187.6 182 53.8
C09p44340 Brassica napus HOM05D007897 ORTHO05D010061 1.8e-45 187.6 374 59.4
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 5.2e-45 186.0 374 61.0
BraA10t43238Z Brassica rapa HOM05D007897 ORTHO05D010061 2.0e-44 184.1 374 60.4
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 2.0e-44 184.1 189 49.2
Lsat_1_v5_gn_1_70121 Lactuca sativa HOM05D007897 ORTHO05D010061 7.5e-44 182.2 374 57.2
BolC9t57304H Brassica oleracea HOM05D007897 ORTHO05D010061 9.8e-44 181.8 374 59.6
BcaC04g20377 Brassica carinata HOM05D007897 ORTHO05D010061 1.1e-34 151.8 155 48.4
arahy.Tifrunner.gnm1.ann1.EZRM4Y Arachis hypogaea HOM05D007897 ORTHO05D010061 1.8e-21 107.8 252 80.6
Manes.05G199032 Manihot esculenta HOM05D007897 ORTHO05D010061 9.8e-20 102.1 232 81.5
HanXRQChr09g0243521 Helianthus annuus HOM05D007897 ORTHO05D010061 3.2e-18 97.1 128 44.5
Prupe.1G171300 Prunus persica HOM05D007897 ORTHO05D010061 1.3e-16 91.7 240 81.7
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.5e-12 78.2 190 31.1
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 7.5e-12 75.9 190 28.9
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 2.2e-11 74.3 190 30.0
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 3.7e-11 73.6 190 30.0
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 6.4e-11 72.8 191 30.4
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 8.3e-11 72.4 186 29.6
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 1.1e-10 72.0 192 29.2
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 1.4e-10 71.6 186 30.6
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 1.4e-10 71.6 186 30.6
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 1.9e-10 71.2 186 30.6
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 4.1e-10 70.1 190 30.5
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 7.1e-10 69.3 190 30.5
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 7.1e-10 69.3 190 28.9
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 9.2e-10 68.9 194 27.3
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 1.6e-09 68.2 186 31.2
A02p10540 Brassica napus HOM05D007897 ORTHO05D010061 2.1e-09 67.8 61 50.8
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 2.1e-09 67.8 190 28.9
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 2.1e-09 67.8 188 29.8
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.7e-09 67.4 177 28.8
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 3.5e-09 67.0 189 30.2
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 4.6e-09 66.6 189 28.6
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 6.0e-09 66.2 189 28.0
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 7.8e-09 65.9 190 31.6
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 1.7e-08 64.7 186 29.0
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 1.7e-08 64.7 126 33.3
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 2.3e-08 64.3 187 32.1
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 3.0e-08 63.9 190 29.5
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 5.1e-08 63.2 190 27.9
arahy.Tifrunner.gnm1.ann1.RRD271 Arachis hypogaea HOM05D007897 ORTHO05D010061 1.6e-06 58.2 49 59.2
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 2.1e-06 57.8 189 25.9


User provided reference genes

Program Settings