Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.1e-64 247.7 132 100.0
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.1e-58 227.3 127 93.7
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-57 226.5 128 94.5
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.2e-46 187.6 102 98.0
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.3e-39 165.2 130 73.1
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.3e-39 165.2 130 73.1
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.4e-37 159.8 132 71.2
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 8.5e-27 124.0 132 57.6
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 4.2e-26 121.7 133 54.9
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 5.5e-26 121.3 126 56.3
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.2e-25 120.2 132 56.8
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.6e-25 119.8 136 54.4
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 2.7e-25 119.0 128 56.2
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 7.9e-25 117.5 132 48.5
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.8e-24 116.3 132 47.7
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 2.3e-24 115.9 132 54.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 3.9e-24 115.2 133 54.9
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 3.9e-24 115.2 131 56.5
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 3.9e-24 115.2 132 47.7
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.7e-24 114.4 133 54.1
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 1.5e-23 113.2 132 54.5
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 2.6e-23 112.5 134 50.7
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 2.6e-23 112.5 132 47.7
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 3.3e-23 112.1 129 48.8
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 5.7e-23 111.3 132 50.8
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 7.4e-23 110.9 136 52.2
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 9.7e-23 110.5 136 50.7
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.3e-22 110.2 135 48.9
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.7e-22 109.8 135 52.6
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.8e-22 108.2 136 51.5
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.8e-22 108.2 136 51.5
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.3e-22 107.8 98 61.2
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 6.3e-22 107.8 132 50.8
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.1e-21 105.5 134 50.0
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 4.1e-21 105.1 139 51.1
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 5.3e-21 104.8 141 48.9
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 9.1e-21 104.0 132 43.9
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 3.4e-20 102.1 133 51.1
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 5.9e-20 101.3 134 45.5
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 5.9e-20 101.3 138 47.8
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 7.7e-20 100.9 120 49.2
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.0e-19 100.5 134 45.5
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 1.3e-19 100.1 134 49.3
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.3e-19 100.1 137 48.9
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.7e-19 99.8 134 50.0
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.2e-19 99.4 131 48.1
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.2e-19 99.4 118 52.5
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 5.0e-19 98.2 130 50.0
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 6.5e-19 97.8 125 49.6
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.1e-18 97.1 134 49.3
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.1e-18 97.1 136 50.0
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.1e-18 97.1 131 47.3
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.5e-18 95.9 134 50.0
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 3.2e-18 95.5 134 49.3
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 3.2e-18 95.5 134 44.8
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 4.2e-18 95.1 118 50.8
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 4.2e-18 95.1 125 48.8
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 7.2e-18 94.4 135 48.1
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 9.4e-18 94.0 127 48.0
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.6e-17 93.2 136 45.6
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.6e-17 93.2 125 44.8
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.0e-17 90.9 131 42.0
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.0e-16 90.5 130 45.4
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 1.4e-16 90.1 142 40.8
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.4e-16 90.1 139 45.3
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.8e-16 89.7 132 42.4
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-16 89.4 131 45.0
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 3.9e-16 88.6 135 44.4
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.2e-16 88.2 127 43.3
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 8.8e-16 87.4 133 47.4
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-15 87.0 131 46.6
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-15 87.0 132 47.0
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.5e-15 86.7 132 47.7
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 1.5e-15 86.7 136 42.6
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.5e-15 86.7 128 46.1
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.5e-15 86.7 128 46.1
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 1.5e-15 86.7 131 46.6
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 1.5e-15 86.7 131 46.6
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.0e-15 86.3 128 43.0
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 2.0e-15 86.3 111 41.4
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.6e-15 85.9 130 41.5
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.3e-15 85.5 127 39.4
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 4.4e-15 85.1 107 43.9
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 5.7e-15 84.7 131 45.8
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 5.7e-15 84.7 129 38.0
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 7.4e-15 84.3 132 43.9
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.4e-15 84.3 130 40.8
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 7.4e-15 84.3 128 43.0
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 7.4e-15 84.3 122 42.6
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 7.4e-15 84.3 131 45.8
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 9.7e-15 84.0 119 46.2
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 1.3e-14 83.6 136 41.9
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-14 83.6 133 45.9
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-14 83.6 133 45.9
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.7e-14 83.2 129 43.4
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.7e-14 83.2 137 42.3
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 2.2e-14 82.8 133 45.9
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 4.8e-14 81.6 133 42.1
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.8e-14 81.6 123 43.9
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 4.8e-14 81.6 146 39.7
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 4.8e-14 81.6 146 39.7
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 6.3e-14 81.3 145 40.0
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 8.2e-14 80.9 133 41.4
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.1e-13 80.5 139 42.4
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.1e-13 80.5 107 43.0
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 1.8e-13 79.7 127 41.7
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.8e-13 79.7 133 44.4
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.4e-13 79.3 154 38.3
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 2.4e-13 79.3 125 44.0
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 3.1e-13 79.0 132 40.2
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 4.1e-13 78.6 99 46.5
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.1e-13 78.6 146 40.4
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 4.1e-13 78.6 137 40.1
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 4.1e-13 78.6 90 48.9
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 5.3e-13 78.2 162 36.4
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 7.0e-13 77.8 129 40.3
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 1.6e-12 76.6 134 41.0
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 2.0e-12 76.3 132 42.4
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 2.0e-12 76.3 119 42.0
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 2.6e-12 75.9 95 46.3
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 3.5e-12 75.5 123 39.0
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 4.5e-12 75.1 107 41.1
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.9e-12 74.7 129 37.2
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 5.9e-12 74.7 135 41.5
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 1.7e-11 73.2 133 41.4
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.2e-11 72.8 122 38.5
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 2.9e-11 72.4 133 42.9
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.9e-11 72.4 129 36.4
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 3.8e-11 72.0 126 42.1
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 5.0e-11 71.6 148 35.8
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 8.5e-11 70.9 143 36.4
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.9e-10 69.7 130 37.7
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 2.5e-10 69.3 129 38.0
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.5e-10 69.3 120 40.0
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 3.2e-10 68.9 129 35.7
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 4.2e-10 68.6 148 34.5
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 5.5e-10 68.2 144 41.0
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.5e-10 68.2 133 36.8
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 5.5e-10 68.2 123 39.0
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 5.5e-10 68.2 133 39.8
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 5.5e-10 68.2 95 44.2
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 7.2e-10 67.8 135 42.2
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 7.2e-10 67.8 123 39.8
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.1e-09 66.2 132 35.6
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.7e-09 65.9 135 39.3
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 6.1e-09 64.7 130 34.6
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 8.0e-09 64.3 158 33.5
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.3e-08 62.8 119 36.1
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 3.0e-08 62.4 76 50.0
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 5.2e-08 61.6 146 34.9
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.2e-07 60.5 99 34.3
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-07 59.7 140 40.0
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 3.3e-07 58.9 128 38.3
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 4.4e-07 58.5 139 33.1
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 4.4e-07 58.5 142 33.1
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 1.7e-06 56.6 136 33.8
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 1.7e-06 56.6 136 33.8
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 2.8e-06 55.8 156 30.8
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 2.8e-06 55.8 156 30.8
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 2.8e-06 55.8 154 31.2
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 2.8e-06 55.8 98 36.7
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 3.7e-06 55.5 157 30.6
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 3.7e-06 55.5 154 31.2
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.7e-06 55.5 130 32.3
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 6.3e-06 54.7 123 37.4


User provided reference genes

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