Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.1e-76 287.7 153 100.0
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.6e-69 266.2 154 93.5
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.4e-57 226.5 127 93.7
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.1e-46 190.3 152 71.7
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.7e-45 184.9 148 70.3
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.7e-45 184.9 148 70.3
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.3e-44 182.6 102 94.1
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.8e-33 146.4 150 58.0
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.4e-33 146.0 150 58.0
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 3.2e-33 145.6 146 59.6
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 1.3e-31 140.2 152 53.3
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 2.3e-31 139.4 154 55.2
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 2.3e-31 139.4 151 55.6
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 3.9e-31 138.7 158 55.7
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.5e-30 136.7 156 53.2
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.5e-30 136.7 151 55.6
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.5e-30 136.7 154 49.4
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 2.5e-30 136.0 151 55.6
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 2.1e-29 132.9 157 52.2
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-29 132.5 118 59.3
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 2.8e-29 132.5 151 55.0
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 3.6e-29 132.1 158 50.6
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 1.0e-28 130.6 150 52.0
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.3e-28 129.4 158 50.0
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.3e-28 129.4 157 49.0
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 4.0e-28 128.6 152 47.4
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.2e-27 127.1 154 53.2
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.2e-27 127.1 155 47.7
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.2e-27 127.1 151 48.3
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 2.0e-27 126.3 148 48.6
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.0e-27 126.3 158 49.4
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 2.6e-27 125.9 157 51.0
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.4e-27 125.6 154 51.9
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 9.8e-27 124.0 152 50.7
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.3e-26 123.6 161 49.1
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.7e-26 123.2 159 49.1
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 4.9e-26 121.7 154 52.6
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 4.9e-26 121.7 140 50.0
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 6.4e-26 121.3 158 48.1
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 6.4e-26 121.3 153 45.1
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 8.3e-26 120.9 143 54.5
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.4e-25 120.2 156 51.3
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.9e-25 119.8 160 50.0
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.9e-25 119.8 152 51.3
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.9e-25 119.8 154 50.6
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.9e-25 119.8 147 49.7
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.4e-25 119.4 152 50.0
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 4.1e-25 118.6 156 47.4
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 4.1e-25 118.6 151 48.3
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 5.4e-25 118.2 148 50.7
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.6e-24 116.7 147 47.6
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 2.0e-24 116.3 148 50.0
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.0e-23 112.5 153 47.7
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 3.9e-23 112.1 157 45.2
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 5.0e-23 111.7 153 46.4
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 8.6e-23 110.9 150 49.3
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 8.6e-23 110.9 150 45.3
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 1.5e-22 110.2 161 42.9
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.5e-22 110.2 129 45.7
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-22 109.8 145 46.2
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.5e-22 109.4 149 49.0
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 2.5e-22 109.4 148 47.3
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 4.3e-22 108.6 166 42.2
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 4.3e-22 108.6 147 47.6
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 5.6e-22 108.2 166 41.6
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.3e-22 107.8 151 43.7
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 7.3e-22 107.8 148 47.3
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.2e-21 107.1 156 46.8
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.2e-21 107.1 157 45.2
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.6e-21 106.7 149 42.3
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 2.8e-21 105.9 153 45.1
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 8.1e-21 104.4 159 45.9
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.4e-20 103.6 174 41.4
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.3e-20 102.8 121 48.8
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.1e-20 102.4 122 46.7
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 4.0e-20 102.1 151 45.0
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 6.8e-20 101.3 161 42.9
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 8.9e-20 100.9 184 38.6
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.2e-19 100.5 148 42.6
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 1.5e-19 100.1 153 43.8
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 2.6e-19 99.4 158 42.4
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 5.8e-19 98.2 156 41.0
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 7.5e-19 97.8 122 45.9
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.3e-18 97.1 147 44.9
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.3e-18 97.1 153 43.1
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.7e-18 96.7 147 43.5
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.7e-18 96.7 165 41.2
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 2.2e-18 96.3 163 41.7
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.9e-18 95.9 146 41.1
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.9e-18 95.1 148 41.9
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.4e-17 93.6 148 41.2
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.9e-17 93.2 149 45.6
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 3.2e-17 92.4 122 44.3
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.2e-17 92.4 159 41.5
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 4.1e-17 92.0 157 45.2
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 4.1e-17 92.0 105 48.6
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 5.4e-17 91.7 159 41.5
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.1e-17 91.3 148 42.6
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 7.1e-17 91.3 151 44.4
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 9.2e-17 90.9 149 43.6
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 9.2e-17 90.9 150 44.0
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-16 90.5 149 43.6
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 1.6e-16 90.1 144 43.8
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-16 90.1 149 43.6
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.7e-16 89.4 158 40.5
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 2.7e-16 89.4 142 44.4
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 2.7e-16 89.4 144 42.4
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 2.7e-16 89.4 132 44.7
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 3.5e-16 89.0 117 45.3
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 4.6e-16 88.6 149 43.0
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 6.0e-16 88.2 146 40.4
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 6.0e-16 88.2 149 43.0
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 6.0e-16 88.2 150 40.7
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 7.8e-16 87.8 153 41.8
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-15 87.4 151 43.0
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-15 87.4 151 43.0
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.3e-15 86.3 148 39.2
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 3.9e-15 85.5 150 39.3
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 5.1e-15 85.1 151 42.4
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 8.6e-15 84.3 108 44.4
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.1e-14 84.0 147 38.8
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.1e-14 84.0 148 38.5
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.5e-14 83.6 148 37.8
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 1.9e-14 83.2 125 38.4
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 1.9e-14 83.2 134 39.6
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 2.5e-14 82.8 176 35.2
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 3.3e-14 82.4 153 39.9
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 4.3e-14 82.0 148 37.2
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 7.3e-14 81.3 151 41.1
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 1.2e-13 80.5 168 35.1
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 1.6e-13 80.1 150 40.0
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 2.8e-13 79.3 147 36.7
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.6e-13 79.0 154 36.4
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 8.1e-13 77.8 162 37.0
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.1e-12 77.4 168 33.9
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.1e-12 77.4 137 38.0
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.4e-12 77.0 169 36.1
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.4e-12 77.0 153 36.6
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 5.2e-12 75.1 142 37.3
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 5.2e-12 75.1 150 38.7
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 6.8e-12 74.7 149 41.6
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.2e-11 73.9 135 37.0
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 2.0e-11 73.2 150 40.7
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.4e-11 72.4 150 37.3
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 3.4e-11 72.4 139 39.6
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 5.8e-11 71.6 147 38.1
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 9.9e-11 70.9 181 32.6
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-10 70.5 145 36.6
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.7e-10 70.1 118 41.5
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.9e-10 68.6 135 41.5
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-09 66.2 121 38.8
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.1e-09 65.5 143 38.5
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 4.1e-09 65.5 132 40.9
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 5.4e-09 65.1 92 46.7
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 7.1e-09 64.7 149 38.9
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.2e-08 63.9 154 33.1
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.6e-08 63.5 166 34.3
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 2.1e-08 63.2 147 35.4
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 2.1e-08 63.2 174 30.5
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 2.1e-08 63.2 147 35.4
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 2.7e-08 62.8 174 30.5
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 3.5e-08 62.4 174 30.5
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 3.5e-08 62.4 174 30.5
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 6.0e-08 61.6 175 30.3
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.0e-07 60.8 97 36.1
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.0e-07 60.8 137 37.2
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 1.3e-07 60.5 142 37.3
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 1.7e-07 60.1 114 36.0
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 2.3e-07 59.7 168 32.1
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 3.0e-07 59.3 139 37.4
QL06p009948 Quercus lobata HOM05D003565 ORTHO05D003943 3.0e-07 59.3 138 36.2
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 8.6e-07 57.8 188 29.8
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.1e-06 57.4 146 30.8
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 1.5e-06 57.0 147 32.7
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 2.5e-06 56.2 177 30.5
FvH4_4g18450 Fragaria vesca HOM05D057627 ORTHO05D046375 3.3e-06 55.8 132 30.3
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 3.3e-06 55.8 146 35.6
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 9.6e-06 54.3 190 29.5


User provided reference genes

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