Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.0e-102 376.7 187 100.0
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 1.8e-67 259.6 188 73.9
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 4.1e-67 258.5 200 73.0
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.7e-60 236.5 197 70.6
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 4.2e-56 221.9 189 62.4
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 5.5e-56 221.5 190 61.6
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 5.5e-56 221.5 193 66.3
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 9.4e-56 220.7 190 61.1
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.8e-54 216.5 190 65.3
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 2.0e-53 213.0 192 61.5
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 7.5e-53 211.1 192 63.0
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 7.0e-51 204.5 192 59.4
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 3.8e-49 198.7 174 62.6
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 2.5e-48 196.1 192 61.5
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.2e-47 193.7 188 59.0
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 1.4e-46 190.3 202 60.4
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 6.8e-46 188.0 195 60.5
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 5.7e-45 184.9 187 55.1
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 5.7e-45 184.9 211 50.7
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 2.2e-44 183.0 208 55.8
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.7e-44 182.2 201 52.7
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 3.7e-44 182.2 203 52.2
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 4.1e-43 178.7 203 51.7
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 1.7e-41 173.3 177 55.9
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 1.7e-41 173.3 212 53.3
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 2.9e-41 172.6 187 52.4
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 3.8e-41 172.2 200 55.0
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.9e-40 169.9 200 54.5
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 7.2e-40 167.9 187 52.4
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 6.1e-39 164.9 184 53.3
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.8e-38 163.3 189 51.9
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.8e-38 163.3 189 51.9
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 1.8e-38 163.3 211 52.1
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 2.3e-38 162.9 144 59.0
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 6.8e-38 161.4 198 54.5
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 6.8e-38 161.4 199 54.8
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 2.9e-36 156.0 160 58.8
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 1.6e-34 150.2 207 48.8
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 3.5e-34 149.1 156 55.8
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 3.9e-33 145.6 184 47.8
Dinv22667 Davidia involucrata HOM05D002704 ORTHO05D002891 1.1e-32 144.1 116 69.0
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 3.3e-32 142.5 175 49.1
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 3.3e-32 142.5 175 49.1
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 4.3e-32 142.1 157 56.1
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.6e-31 140.2 211 49.3
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 1.6e-31 140.2 195 46.2
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 2.1e-31 139.8 204 48.0
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.1e-31 139.8 189 48.1
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 2.8e-31 139.4 221 46.2
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 6.8e-30 134.8 202 44.1
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 3.7e-28 129.0 161 49.7
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 1.1e-27 127.5 178 44.9
Sed0010272 Sechium edule HOM05D002704 ORTHO05D002891 1.3e-25 120.6 162 47.5
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 2.3e-25 119.8 194 42.8
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 3.0e-25 119.4 214 41.6
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 9.5e-24 114.4 188 44.1
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 8.3e-20 101.3 181 37.6
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 3.2e-19 99.4 119 46.2
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 1.2e-18 97.4 182 34.1
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 1.7e-17 93.6 156 34.0
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 3.0e-17 92.8 174 36.2
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 8.6e-17 91.3 215 30.2
Os12g0233100 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 4.3e-16 89.0 137 40.9
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 4.3e-16 89.0 136 37.5
PSO675G3707 Papaver somniferum HOM05D047741 ORTHO05D002891 1.2e-15 87.4 204 36.3
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 1.2e-15 87.4 151 31.8
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.6e-15 87.0 150 36.0
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 1.6e-15 87.0 203 32.5
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.1e-15 86.7 143 35.7
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.8e-15 86.3 136 36.0
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 3.6e-15 85.9 161 32.9
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 6.2e-15 85.1 172 32.6
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 6.2e-15 85.1 161 32.9
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 6.2e-15 85.1 191 31.9
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 1.1e-14 84.3 189 32.3
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 1.1e-14 84.3 197 32.5
PSO017G2423 Papaver somniferum HOM05D047741 ORTHO05D002891 1.8e-14 83.6 191 37.2
RcHm_v2.0_Chr4g0408971 Rosa chinensis HOM05D002704 ORTHO05D002891 1.8e-14 83.6 108 49.1
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.8e-14 83.6 173 34.1
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 3.1e-14 82.8 191 30.9
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 4.0e-14 82.4 137 34.3
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 5.2e-14 82.0 138 35.5
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 5.2e-14 82.0 138 35.5
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 5.2e-14 82.0 154 32.5
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 5.2e-14 82.0 123 35.0
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.8e-14 81.6 138 35.5
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.2e-13 80.9 137 35.8
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.5e-13 80.5 205 28.8
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.0e-13 80.1 191 27.7
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 2.6e-13 79.7 170 32.4
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 2.6e-13 79.7 207 30.0
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 3.4e-13 79.3 138 34.8
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 3.4e-13 79.3 158 32.3
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 4.4e-13 79.0 191 31.4
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 4.4e-13 79.0 143 32.2
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 4.4e-13 79.0 165 29.1
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 5.8e-13 78.6 187 28.3
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 5.8e-13 78.6 159 29.6
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 7.6e-13 78.2 162 29.6
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 9.9e-13 77.8 200 28.0
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 9.9e-13 77.8 154 30.5
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 9.9e-13 77.8 147 31.3
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 1.3e-12 77.4 156 30.1
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.3e-12 77.4 202 27.2
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.7e-12 77.0 195 31.8
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 1.7e-12 77.0 191 28.3
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 1.7e-12 77.0 201 29.4
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 2.2e-12 76.6 197 31.0
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 2.9e-12 76.3 211 24.6
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 3.7e-12 75.9 208 28.8
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 3.7e-12 75.9 153 33.3
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 3.7e-12 75.9 143 32.9
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.7e-12 75.9 197 28.4
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.7e-12 75.9 180 29.4
SGA_v2.0_scaffold31G12567 Striga asiatica HOM05D002704 ORTHO05D002891 3.7e-12 75.9 116 44.8
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 4.9e-12 75.5 147 32.7
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 4.9e-12 75.5 196 28.1
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 4.9e-12 75.5 159 31.4
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 4.9e-12 75.5 197 27.9
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 8.4e-12 74.7 161 28.6
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 8.4e-12 74.7 165 29.1
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 8.4e-12 74.7 183 31.1
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.1e-11 74.3 183 31.1
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.4e-11 73.9 144 29.9
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 1.4e-11 73.9 155 31.0
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 1.4e-11 73.9 181 31.5
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.4e-11 73.9 183 30.6
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.9e-11 73.6 142 30.3
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 3.2e-11 72.8 189 28.6
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 3.2e-11 72.8 194 28.9
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 3.2e-11 72.8 206 26.7
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 4.1e-11 72.4 153 28.1
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 4.1e-11 72.4 198 32.3
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 5.4e-11 72.0 181 30.4
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 7.1e-11 71.6 199 27.1
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 7.1e-11 71.6 201 27.4
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 9.2e-11 71.2 190 26.3
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 9.2e-11 71.2 136 33.1
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 9.2e-11 71.2 148 31.1
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 1.2e-10 70.9 156 30.1
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.2e-10 70.9 195 29.2
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 3.5e-10 69.3 186 30.6
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 3.5e-10 69.3 239 24.3
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 3.5e-10 69.3 161 27.3
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 3.5e-10 69.3 185 26.5
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 3.5e-10 69.3 149 28.2
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 4.6e-10 68.9 188 27.1
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 7.8e-10 68.2 148 30.4
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 1.0e-09 67.8 210 31.0
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 1.0e-09 67.8 199 26.1
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 1.0e-09 67.8 178 27.5
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.3e-09 67.4 187 27.3
MELO3C030199.2 Cucumis melo HOM05D002704 ORTHO05D002891 3.0e-09 66.2 80 53.8
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 3.0e-09 66.2 162 25.9
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 3.0e-09 66.2 198 29.8
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 3.0e-09 66.2 181 29.8
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 3.9e-09 65.9 180 28.3
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 6.6e-09 65.1 201 26.9
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 2.5e-08 63.2 219 25.6
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 3.3e-08 62.8 207 28.5
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 3.3e-08 62.8 204 24.5
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 7.3e-08 61.6 215 26.0
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 7.3e-08 61.6 178 28.7
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 7.3e-08 61.6 159 27.7
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 2.8e-07 59.7 164 25.6
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 4.7e-07 58.9 203 23.6
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 1.1e-06 57.8 177 29.4
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 1.8e-06 57.0 232 26.7
CDE12G0481 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.4e-06 56.6 128 29.7
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 3.1e-06 56.2 193 31.1
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 4.0e-06 55.8 213 28.2
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 6.8e-06 55.1 134 32.8
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 6.8e-06 55.1 198 25.8
TAR633G2309 Trochodendron aralioides HOM05D001667 ORTHO05D001508 6.8e-06 55.1 134 27.6
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 8.9e-06 54.7 107 35.5


User provided reference genes

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