Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 0.0e+00 1141.7 595 100.0
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 2.9e-260 901.7 623 77.0
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.4e-257 892.9 624 76.6
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.1e-243 846.7 623 73.7
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 2.6e-224 782.3 627 67.8
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 2.5e-219 765.8 623 65.2
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 1.6e-218 763.1 636 64.5
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.3e-217 759.2 629 64.1
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 4.0e-217 758.4 623 65.0
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.6e-216 755.7 624 65.1
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 3.4e-216 755.4 623 65.3
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 3.4e-216 755.4 623 65.3
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 4.9e-215 751.5 626 64.4
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 2.7e-213 745.7 620 64.5
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 7.8e-213 744.2 619 63.3
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-212 743.0 636 62.3
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.6e-212 740.7 636 62.3
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.6e-212 740.7 636 62.3
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.9e-211 739.6 636 62.3
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 4.3e-211 738.4 625 62.4
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.6e-211 738.0 636 61.9
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 9.5e-211 737.3 636 61.9
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-210 736.5 636 61.9
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-210 735.7 636 61.8
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.1e-209 733.8 620 63.7
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.1e-209 733.8 598 65.9
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.4e-209 733.4 619 63.7
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 6.8e-209 731.1 621 64.4
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.5e-208 729.9 599 65.9
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 2.6e-208 729.2 626 63.3
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 4.4e-208 728.4 622 63.0
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 5.8e-208 728.0 623 64.0
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 7.6e-208 727.6 619 63.8
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.9e-206 723.0 623 62.9
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 4.1e-206 721.8 628 63.5
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 5.4e-206 721.5 626 61.8
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 3.9e-204 715.3 624 61.7
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 6.6e-204 714.5 628 62.6
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 4.3e-195 685.3 630 58.7
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 8.1e-194 681.0 627 60.9
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.5e-192 676.8 641 59.6
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 2.6e-192 676.0 645 58.0
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 4.4e-192 675.2 630 60.5
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 2.2e-191 672.9 642 58.6
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.9e-190 669.8 622 58.4
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 7.1e-190 667.9 630 59.2
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 7.1e-190 667.9 645 58.4
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 7.1e-190 667.9 620 59.8
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 2.1e-189 666.4 629 58.3
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.3e-188 662.9 625 57.4
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 2.3e-188 662.9 621 59.1
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 2.0e-184 649.8 629 57.9
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 2.6e-184 649.4 640 55.5
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 2.2e-183 646.4 628 55.9
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 2.9e-183 646.0 617 57.4
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 4.9e-183 645.2 625 57.9
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 1.9e-182 643.3 634 56.0
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 3.2e-182 642.5 635 56.4
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 9.3e-182 641.0 623 57.0
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 2.7e-181 639.4 622 56.9
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 4.6e-181 638.6 644 54.5
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 4.6e-181 638.6 613 57.6
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 3.3e-179 632.5 623 56.5
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 7.4e-179 631.3 627 55.7
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 2.1e-178 629.8 632 57.3
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 8.1e-178 627.9 643 54.7
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.9e-175 618.6 631 55.0
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 6.5e-175 618.2 641 54.8
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.4e-174 617.1 617 56.1
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.2e-174 615.9 619 54.6
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 4.2e-174 615.5 602 55.5
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.6e-173 613.6 617 54.6
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 3.5e-173 612.5 627 54.2
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 2.3e-172 609.8 609 57.5
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 3.0e-172 609.4 612 53.9
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 6.7e-172 608.2 594 55.6
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 5.7e-171 605.1 633 51.8
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-170 603.6 617 56.4
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 6.2e-170 601.7 615 56.1
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 8.2e-170 601.3 617 55.9
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 1.4e-169 600.5 616 55.4
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 3.1e-169 599.4 618 55.3
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 5.3e-169 598.6 628 54.1
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 7.6e-168 594.7 634 52.4
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.7e-165 586.3 633 53.7
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 2.3e-164 583.2 627 52.8
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 1.1e-163 580.9 617 52.8
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 2.2e-162 576.6 536 60.8
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 2.8e-162 576.2 585 55.9
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.2e-160 570.9 547 59.2
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 7.7e-160 568.2 636 50.8
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 2.1e-157 560.1 633 49.8
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.5e-155 553.9 625 49.6
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 2.5e-155 553.1 641 49.8
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 5.7e-155 552.0 583 53.3
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 5.7e-155 552.0 632 50.8
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 9.7e-155 551.2 595 52.9
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 5.9e-152 542.0 600 52.3
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 1.2e-144 517.7 416 67.1
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 5.5e-142 508.8 636 49.5
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 4.7e-141 505.8 663 45.2
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 8.0e-141 505.0 657 45.4
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.0e-140 503.1 427 63.9
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.3e-137 492.3 404 65.6
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 3.8e-135 486.1 404 65.3
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 4.2e-134 482.6 652 44.3
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.6e-133 480.7 605 46.9
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.0e-132 476.5 607 46.1
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 1.3e-130 471.1 502 53.0
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 5.0e-127 459.1 410 62.2
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 5.5e-126 455.7 598 49.2
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.4e-121 440.3 609 46.8
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 7.8e-112 408.7 598 45.0
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 5.0e-111 406.0 585 45.1
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 3.3e-110 403.3 369 58.3
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 6.8e-108 395.6 623 41.3
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 8.9e-108 395.2 328 65.5
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 5.8e-107 392.5 588 44.7
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 6.4e-106 389.0 588 44.6
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 6.4e-106 389.0 590 44.4
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 7.0e-105 385.6 370 57.3
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.6e-104 384.4 337 62.3
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 2.7e-104 383.6 590 44.1
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 7.8e-104 382.1 617 42.5
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 2.3e-103 380.6 586 43.0
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 1.7e-95 354.4 587 41.4
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-86 323.9 584 39.9
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.2e-85 319.3 589 39.9
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 2.9e-82 310.5 654 32.7
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.7e-80 303.9 504 41.5
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 6.4e-74 282.7 573 37.9
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.2e-73 280.4 545 38.5
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 4.8e-61 240.0 520 37.1
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 7.6e-51 206.1 632 29.0
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 8.5e-50 202.6 317 44.2
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.3e-46 190.3 241 48.1
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 9.7e-46 189.1 165 61.2
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-43 182.2 192 57.3
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 4.4e-38 163.7 149 58.4
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 1.8e-36 158.3 107 74.8
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 7.7e-35 152.9 154 58.4
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 9.4e-33 146.0 242 44.2
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 3.9e-31 140.6 158 53.8
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 3.9e-31 140.6 116 62.9
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 6.7e-31 139.8 366 33.1
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 5.3e-28 130.2 435 27.8
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 2.0e-27 128.3 172 43.0
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 3.5e-27 127.5 87 74.7
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 5.0e-26 123.6 71 83.1
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 1.1e-25 122.5 87 71.3
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-24 118.6 94 64.9
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 3.6e-24 117.5 131 53.4
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 4.4e-22 110.5 97 57.7
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 9.7e-22 109.4 79 65.8
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 4.5e-19 100.5 79 63.3
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 5.9e-19 100.1 70 65.7
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 3.8e-18 97.4 79 58.2
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 3.2e-17 94.4 79 60.8
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 9.4e-17 92.8 97 55.7
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.1e-16 91.7 143 43.4
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.1e-16 90.1 272 29.4
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.4e-15 89.0 121 44.6
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-13 82.4 210 33.3
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 1.3e-13 82.4 210 33.3
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 2.8e-13 81.3 210 33.3
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 3.1e-12 77.8 51 70.6
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 7.7e-11 73.2 54 68.5
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 6.5e-10 70.1 90 43.3
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-09 68.9 72 54.2
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 4.2e-09 67.4 80 46.2
Actinidia21257 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.8e-08 64.7 62 58.1
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 1.8e-07 62.0 50 60.0


User provided reference genes

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