Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G055000 Carya illinoinensis HOM05D007749 ORTHO05D009809 1.4e-66 256.1 127 100.0
QL10p048728 Quercus lobata HOM05D007749 ORTHO05D009809 3.2e-39 165.2 119 70.6
Sed0008576 Sechium edule HOM05D007749 ORTHO05D009809 3.5e-38 161.8 119 68.1
ClCG08G004660 Citrullus lanatus HOM05D007749 ORTHO05D009809 7.9e-38 160.6 119 66.4
CsaV3_6G003910 Cucumis sativus L. HOM05D007749 ORTHO05D009809 7.9e-38 160.6 119 67.2
Manes.11G120200 Manihot esculenta HOM05D007749 ORTHO05D009809 7.9e-38 160.6 119 62.2
CANSAT56G0324 Cannabis sativa HOM05D007749 ORTHO05D009809 2.3e-37 159.1 119 63.9
CANSAT56G2176 Cannabis sativa HOM05D007749 ORTHO05D009809 2.3e-37 159.1 119 63.9
TAR633G0982 Trochodendron aralioides HOM05D007749 ORTHO05D009809 5.1e-37 157.9 119 63.0
MELO3C011656.2 Cucumis melo HOM05D007749 ORTHO05D009809 1.1e-36 156.8 119 65.5
MD04G1040200 Malus domestica HOM05D007749 ORTHO05D009809 1.9e-36 156.0 119 67.2
GSVIVG01010752001 Vitis vinifera HOM05D007749 ORTHO05D009809 2.1e-35 152.5 110 67.3
COL.COLO4_07660 Corchorus olitorius HOM05D007749 ORTHO05D009809 2.8e-35 152.1 117 60.7
CDE04G2919 Ceratophyllum demersum HOM05D007749 ORTHO05D009809 3.7e-35 151.8 116 62.9
Psat1g007040 Pisum sativum HOM05D007749 ORTHO05D009809 4.8e-35 151.4 124 61.3
AUR62000855 Chenopodium quinoa HOM05D007749 ORTHO05D009809 6.2e-35 151.0 116 60.3
Aa31LG1G25110 Aethionema arabicum HOM05D007749 ORTHO05D009809 1.1e-34 150.2 120 61.7
AUR62005121 Chenopodium quinoa HOM05D007749 ORTHO05D009809 1.1e-34 150.2 116 59.5
CDE07G1555 Ceratophyllum demersum HOM05D007749 ORTHO05D009809 1.4e-34 149.8 116 62.1
Rhsim09G0028100 Rhododendron simsii HOM05D007749 ORTHO05D009809 1.8e-34 149.4 116 62.1
BcaC02g07190 Brassica carinata HOM05D007749 ORTHO05D009809 2.4e-34 149.1 120 61.7
BraA04t18728Z Brassica rapa HOM05D007749 ORTHO05D009809 2.4e-34 149.1 120 61.7
Atru.chr3.1496 Acer truncatum HOM05D007749 ORTHO05D009809 5.3e-34 147.9 120 62.5
A04p32650 Brassica napus HOM05D007749 ORTHO05D009809 5.3e-34 147.9 120 61.7
BcaB06g29301 Brassica carinata HOM05D007749 ORTHO05D009809 6.9e-34 147.5 120 60.8
C04p70340 Brassica napus HOM05D007749 ORTHO05D009809 6.9e-34 147.5 120 60.8
BolC4t28537H Brassica oleracea HOM05D007749 ORTHO05D009809 6.9e-34 147.5 120 60.8
Lj3g0008958 Lotus japonicus HOM05D007749 ORTHO05D009809 9.0e-34 147.1 118 62.7
Oeu037445.1 Olea europaea HOM05D007749 ORTHO05D009809 9.0e-34 147.1 114 60.5
Thhalv10001764m.g Eutrema salsugineum HOM05D007749 ORTHO05D009809 1.5e-33 146.4 116 61.2
AT2G43310 Arabidopsis thaliana HOM05D007749 ORTHO05D009809 2.0e-33 146.0 120 60.0
Dinv44193 Davidia involucrata HOM05D006659 ORTHO05D008372 2.6e-33 145.6 119 58.8
Glyma.13G344000 Glycine max HOM05D007749 ORTHO05D009809 2.6e-33 145.6 124 58.9
Gohir.D10G129800 Gossypium hirsutum HOM05D007749 ORTHO05D009809 4.5e-33 144.8 117 58.1
CARHR138400 Cardamine hirsuta HOM05D007749 ORTHO05D009809 5.8e-33 144.4 120 59.2
Sp4g25410 Schrenkiella parvula HOM05D007749 ORTHO05D009809 5.8e-33 144.4 116 60.3
Gohir.A10G136900 Gossypium hirsutum HOM05D007749 ORTHO05D009809 7.6e-33 144.1 117 57.3
Thecc.04G180100 Theobroma cacao HOM05D007749 ORTHO05D009809 7.6e-33 144.1 125 56.8
Lalb_Chr14g0372461 Lupinus albus HOM05D007749 ORTHO05D009809 9.9e-33 143.7 133 56.4
THA.LOC104803661 Tarenaya hassleriana HOM05D007749 ORTHO05D009809 1.7e-32 142.9 119 57.1
PGR142G0736 Punica granatum HOM05D007749 ORTHO05D009809 2.2e-32 142.5 121 62.0
AL4G41990 Arabidopsis lyrata HOM05D007749 ORTHO05D009809 3.8e-32 141.7 120 58.3
Duzib151G1147 Durio zibethinus HOM05D007749 ORTHO05D009809 4.9e-32 141.4 116 56.0
Eucgr.H00373 Eucalyptus grandis HOM05D007749 ORTHO05D009809 4.9e-32 141.4 117 60.7
Gorai.011G143100 Gossypium raimondii HOM05D007749 ORTHO05D009809 4.9e-32 141.4 117 56.4
Lsat_1_v5_gn_5_23460 Lactuca sativa HOM05D007749 ORTHO05D009809 6.4e-32 141.0 116 56.0
Medtr2g098870 Medicago truncatula HOM05D007749 ORTHO05D009809 6.4e-32 141.0 119 59.7
Phvul.005G152700 Phaseolus vulgaris HOM05D007749 ORTHO05D009809 1.9e-31 139.4 116 60.3
DCAR_008501 Daucus carota HOM05D007749 ORTHO05D009809 4.2e-31 138.3 114 59.6
VMungo1080G1081 Vigna mungo HOM05D007749 ORTHO05D009809 4.2e-31 138.3 122 59.0
Potri.017G030200 Populus trichocarpa HOM05D007749 ORTHO05D009809 7.1e-31 137.5 121 58.7
FvH4_4g10741 Fragaria vesca HOM05D007749 ORTHO05D009809 9.3e-31 137.1 119 61.3
TWI15G0305 Tripterygium wilfordii HOM05D007749 ORTHO05D009809 2.1e-30 136.0 120 54.2
TWI15G0741 Tripterygium wilfordii HOM05D007749 ORTHO05D009809 2.1e-30 136.0 120 54.2
Carub.0004s2577 Capsella rubella HOM05D007749 ORTHO05D009809 2.7e-30 135.6 116 56.0
Aqoxy7G01786 Aquilegia oxysepala HOM05D007749 ORTHO05D009809 3.5e-30 135.2 117 53.8
Sabra07G0104500 Salix brachista HOM05D007749 ORTHO05D009809 3.5e-30 135.2 121 57.9
Migut.B01511 Erythranthe guttata HOM05D007749 ORTHO05D009809 1.0e-29 133.7 123 54.5
Aqoxy7G01782 Aquilegia oxysepala HOM05D007749 ORTHO05D009809 1.3e-29 133.3 117 53.0
ECA246G4014 Erigeron canadensis HOM05D007749 ORTHO05D009809 3.0e-29 132.1 119 52.9
SGA_v2.0_scaffold52G19242 Striga asiatica HOM05D007749 ORTHO05D009809 1.1e-28 130.2 117 55.6
Cc00_g14450 Coffea canephora HOM05D007749 ORTHO05D009809 1.5e-28 129.8 116 52.6
PGSC0003DMG400020513 Solanum tuberosum HOM05D007749 ORTHO05D009809 1.5e-28 129.8 117 54.7
HanXRQChr02g0051151 Helianthus annuus HOM05D007749 ORTHO05D009809 1.9e-28 129.4 119 51.3
Potri.007G128100 Populus trichocarpa HOM05D007749 ORTHO05D009809 1.9e-28 129.4 121 57.0
Sc25g0002390 Simmondsia chinensis HOM05D007749 ORTHO05D009809 3.3e-28 128.6 97 64.9
Sopen08g003040 Solanum pennellii HOM05D007749 ORTHO05D009809 5.6e-28 127.9 117 53.0
SalBow7G2644 Salvia bowleyana HOM05D007749 ORTHO05D009809 1.6e-27 126.3 117 54.7
unitig_61.g26426 Utricularia gibba HOM05D007749 ORTHO05D009809 1.4e-26 123.2 116 50.9
Ciclev10022681m.g Citrus clementina HOM05D007749 ORTHO05D009809 1.8e-26 122.9 117 54.7
CAN.G845.29 Capsicum annuum HOM05D007749 ORTHO05D009809 5.3e-26 121.3 117 52.1
Nitab4.5_0005487g0020 Nicotiana tabacum HOM05D002689 ORTHO05D003129 6.9e-26 120.9 116 50.9
MD07G1093600 Malus domestica HOM05D007749 ORTHO05D009809 1.5e-25 119.8 103 63.1
Glyma.15G030300 Glycine max HOM05D007749 ORTHO05D009809 2.6e-25 119.0 107 55.1
QL02p093050 Quercus lobata HOM05D000759 ORTHO05D000574 4.9e-24 114.8 101 59.4
BcaB06g29300 Brassica carinata HOM05D007749 ORTHO05D009809 6.5e-24 114.4 98 59.2
Ca_01260_v3 Cicer arietinum L. HOM05D007749 ORTHO05D009809 6.5e-24 114.4 88 63.6
HPP92_012796 Vanilla planifolia HOM05D007749 ORTHO05D009809 1.4e-23 113.2 118 51.7
MD07G1010900 Malus domestica HOM05D007749 ORTHO05D009809 1.9e-23 112.8 107 57.9
Sc04g0006060 Simmondsia chinensis HOM05D007749 ORTHO05D009809 2.5e-23 112.5 98 59.2
Prupe.1G192700 Prunus persica HOM05D007749 ORTHO05D009809 5.5e-23 111.3 107 57.0
ATR0824G043 Amborella trichopoda HOM05D007749 ORTHO05D009809 2.7e-22 109.0 111 44.1
Prupe.1G193800 Prunus persica HOM05D007749 ORTHO05D009809 2.5e-20 102.4 90 57.8
QL04p015298 Quercus lobata HOM05D007749 ORTHO05D009809 1.3e-19 100.1 90 57.8
PGSC0003DMG400020496 Solanum tuberosum HOM05D007749 ORTHO05D009809 2.4e-18 95.9 90 52.2
HPP92_012728 Vanilla planifolia HOM05D007749 ORTHO05D009809 5.0e-16 88.2 118 45.8
Actinidia35976 Actinidia chinensis HOM05D007749 ORTHO05D009809 1.9e-15 86.3 116 44.0
Actinidia34603 Actinidia chinensis HOM05D007749 ORTHO05D009809 2.5e-15 85.9 116 46.6
Nitab4.5_0010461g0010 Nicotiana tabacum HOM05D002689 ORTHO05D003129 1.9e-12 76.3 78 46.2
SEGI_37948 Sequoiadendron giganteum HOM05D007749 ORTHO05D009809 3.7e-11 72.0 115 32.2
MD08G1180100 Malus domestica HOM05D007749 ORTHO05D009809 1.9e-07 59.7 51 64.7


User provided reference genes

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