Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 0.0e+00 1124.0 537 100.0
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 1.2e-297 1025.8 537 90.5
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 3.4e-292 1007.7 560 86.2
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 7.1e-290 1000.0 537 86.0
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 3.5e-289 997.7 537 86.4
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 4.6e-289 997.3 537 86.6
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 4.6e-289 997.3 537 85.3
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 1.3e-288 995.7 537 86.6
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 3.0e-288 994.6 537 86.0
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 8.7e-288 993.0 537 86.2
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 2.5e-287 991.5 537 84.5
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 3.3e-287 991.1 537 86.0
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 3.3e-287 991.1 537 84.7
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 4.3e-287 990.7 537 85.3
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 9.6e-287 989.6 537 84.4
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 6.9e-285 983.4 537 84.7
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 9.0e-285 983.0 537 84.7
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 6.4e-283 976.9 537 83.4
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 2.5e-282 974.9 537 84.0
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 5.5e-282 973.8 537 84.5
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 3.5e-281 971.1 537 84.0
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 1.0e-280 969.5 537 84.2
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 2.3e-280 968.4 537 83.8
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 3.0e-280 968.0 537 84.5
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 5.7e-279 963.8 537 83.4
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 1.6e-278 962.2 537 82.7
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 1.4e-277 959.1 537 83.1
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 1.4e-277 959.1 537 82.3
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 1.8e-277 958.7 537 82.7
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 3.1e-277 958.0 537 81.6
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 4.5e-276 954.1 537 82.1
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 2.2e-275 951.8 537 80.3
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 8.4e-275 949.9 537 83.1
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 8.4e-275 949.9 558 79.9
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 3.2e-274 948.0 537 82.7
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 3.2e-274 948.0 536 80.6
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 5.5e-274 947.2 537 82.9
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 7.1e-274 946.8 582 77.1
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 9.3e-274 946.4 537 80.6
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 9.3e-274 946.4 576 77.4
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 2.1e-273 945.3 537 80.3
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 2.1e-273 945.3 537 80.3
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 2.7e-273 944.9 537 80.1
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 3.5e-273 944.5 537 80.4
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 3.5e-273 944.5 537 80.1
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 1.3e-272 942.6 537 80.4
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 8.7e-272 939.9 537 79.9
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 1.1e-271 939.5 537 80.3
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 1.1e-271 939.5 537 79.7
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 1.5e-271 939.1 599 74.3
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 4.3e-271 937.6 563 77.8
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 5.7e-271 937.2 537 81.6
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 7.4e-271 936.8 537 81.0
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 9.7e-271 936.4 537 80.3
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 1.1e-269 932.9 537 79.7
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 9.0e-269 929.9 537 79.9
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 1.5e-268 929.1 537 79.1
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 5.9e-268 927.2 597 74.5
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 2.2e-267 925.2 537 78.4
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 8.5e-267 923.3 537 78.2
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 2.1e-265 918.7 567 76.0
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 4.6e-265 917.5 537 78.8
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 7.9e-265 916.8 509 83.3
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 7.9e-265 916.8 537 80.1
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 1.1e-263 912.9 536 78.2
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 3.3e-263 911.4 537 81.0
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 4.3e-263 911.0 536 76.7
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 5.7e-263 910.6 537 77.5
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 5.7e-263 910.6 547 77.0
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 2.2e-262 908.7 697 67.4
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 2.8e-262 908.3 537 76.9
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 3.1e-261 904.8 593 71.8
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 1.2e-257 892.9 514 78.6
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 7.4e-255 883.6 537 79.3
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 2.8e-254 881.7 545 74.9
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 2.9e-251 871.7 487 83.2
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 4.2e-250 867.8 537 74.7
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 5.7e-247 857.4 747 59.0
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 7.4e-247 857.1 537 74.7
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 2.4e-245 852.0 468 82.7
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 2.0e-244 849.0 539 72.0
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 1.0e-243 846.7 537 75.0
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 3.2e-242 841.6 540 70.9
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 4.7e-241 837.8 467 81.8
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 3.1e-229 798.5 537 70.9
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 4.1e-229 798.1 537 70.9
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 1.3e-222 776.5 432 81.7
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 4.6e-220 768.1 539 67.7
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 3.4e-215 751.9 492 70.7
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 7.8e-196 687.6 449 73.7
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 2.8e-193 679.1 550 58.5
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 1.9e-189 666.4 369 81.3
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 1.2e-183 647.1 422 69.2
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 1.3e-177 627.1 586 55.1
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 3.0e-171 605.9 534 56.2
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 9.6e-170 600.9 556 52.3
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 1.7e-166 590.1 439 64.2
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 5.7e-162 575.1 553 51.2
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 6.3e-153 545.0 345 74.8
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 2.0e-135 486.9 336 70.5
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 4.8e-121 439.1 437 54.7
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 4.1e-112 409.5 250 75.2
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 2.6e-98 363.6 201 80.6
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 5.8e-98 362.5 202 79.7
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 3.9e-78 296.6 169 81.7
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 5.1e-78 296.2 172 77.3
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 2.5e-77 293.9 174 80.5
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 1.2e-76 291.6 169 80.5
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 3.4e-74 283.5 170 78.8
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 2.1e-55 221.1 150 68.7
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 9.6e-53 212.2 119 83.2
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 2.7e-47 194.1 116 75.0
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.3e-46 191.8 104 87.5
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 4.8e-36 156.8 127 64.6
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.6e-34 151.0 127 62.2
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 6.5e-33 146.4 82 78.0
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 8.2e-28 129.4 69 87.0
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.5e-26 125.2 112 59.8
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.5e-26 125.2 112 59.8
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.7e-25 121.7 68 83.8
CSS0016187 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.0e-18 98.2 78 66.7
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 2.8e-12 77.8 43 83.7
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 8.2e-12 76.3 54 61.1
CSS0019028 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 1.1e-11 75.9 41 87.8
CSS0008442 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 1.2e-10 72.4 40 85.0
CSS0022444 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 1.2e-10 72.4 40 85.0
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.0e-10 71.6 59 62.7
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.7e-07 61.2 34 79.4
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 8.0e-07 59.7 42 61.9
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 6.8e-06 56.6 51 49.0


User provided reference genes

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