Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 4.5e-103 377.9 184 100.0
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 8.6e-70 267.3 148 84.5
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.2e-63 246.9 145 79.3
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 3.5e-63 245.4 145 79.3
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 1.9e-61 239.6 146 76.7
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 5.3e-59 231.5 146 73.3
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 2.6e-58 229.2 163 66.3
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 4.4e-58 228.4 146 71.9
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 2.2e-57 226.1 147 70.7
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 3.2e-56 222.2 150 67.3
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 4.2e-56 221.9 148 66.2
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 4.2e-56 221.9 148 66.2
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 5.4e-56 221.5 156 67.3
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 4.6e-55 218.4 156 64.7
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 7.9e-55 217.6 148 69.6
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 7.9e-55 217.6 178 58.4
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.7e-54 216.5 148 68.9
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 3.0e-54 215.7 146 67.1
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 3.9e-54 215.3 151 66.2
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.9e-54 215.3 151 66.2
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 8.7e-54 214.2 148 65.5
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.9e-53 213.0 149 64.4
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 2.5e-53 212.6 150 65.3
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 5.6e-53 211.5 149 62.4
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 7.3e-53 211.1 145 68.3
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 9.6e-53 210.7 176 58.0
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 9.6e-53 210.7 146 66.4
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 9.6e-53 210.7 163 62.6
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 1.6e-52 209.9 146 65.8
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 2.8e-52 209.1 163 60.1
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 2.8e-52 209.1 148 62.2
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 4.8e-52 208.4 146 66.4
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 4.8e-52 208.4 175 57.7
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 4.8e-52 208.4 150 62.7
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.8e-52 208.4 151 64.2
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 6.2e-52 208.0 148 63.5
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 8.1e-52 207.6 150 62.7
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 8.1e-52 207.6 148 64.9
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 1.1e-51 207.2 163 62.0
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 1.4e-51 206.8 179 56.4
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.4e-51 206.8 145 64.8
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.4e-51 206.8 151 64.2
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 3.1e-51 205.7 146 66.4
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 5.3e-51 204.9 148 63.5
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 6.9e-51 204.5 146 63.0
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 6.9e-51 204.5 146 63.0
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 6.9e-51 204.5 150 61.3
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 9.0e-51 204.1 146 63.0
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 1.2e-50 203.8 150 61.3
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.2e-50 203.8 146 61.6
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.2e-50 203.8 146 61.6
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.5e-50 203.4 146 61.0
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 2.0e-50 203.0 148 63.5
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 3.4e-50 202.2 150 61.3
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 4.5e-50 201.8 145 60.7
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 5.8e-50 201.4 145 62.8
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 5.8e-50 201.4 150 62.0
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 5.8e-50 201.4 145 64.1
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 5.8e-50 201.4 148 61.5
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.3e-49 200.3 148 60.8
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 1.7e-49 199.9 150 62.0
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 2.9e-49 199.1 150 63.3
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 3.8e-49 198.7 144 62.5
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 6.4e-49 198.0 146 61.6
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 6.4e-49 198.0 192 51.6
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 8.4e-49 197.6 146 61.6
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 8.4e-49 197.6 146 61.6
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 8.4e-49 197.6 146 61.0
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 8.4e-49 197.6 148 59.5
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 8.4e-49 197.6 150 62.7
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 1.1e-48 197.2 157 59.9
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.1e-48 197.2 149 61.7
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 1.1e-48 197.2 148 58.8
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.1e-48 197.2 148 60.1
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.9e-48 196.4 151 57.0
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.4e-48 196.1 151 56.3
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 2.4e-48 196.1 144 61.1
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.2e-48 195.7 164 54.9
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 3.2e-48 195.7 180 51.7
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 4.2e-48 195.3 146 61.0
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 5.4e-48 194.9 149 59.1
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 9.3e-48 194.1 146 58.9
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.6e-47 193.4 150 60.0
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.1e-47 193.0 152 57.2
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 2.7e-47 192.6 145 58.6
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 6.0e-47 191.4 144 59.7
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 1.0e-46 190.7 150 58.7
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 1.0e-46 190.7 150 58.7
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 1.0e-46 190.7 150 58.7
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 1.0e-46 190.7 147 61.9
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.3e-46 190.3 146 58.2
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 1.8e-46 189.9 150 59.3
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 2.3e-46 189.5 151 57.0
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 3.9e-46 188.7 148 57.4
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 3.9e-46 188.7 149 58.4
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 6.7e-46 188.0 162 56.2
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.1e-45 187.2 146 59.6
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.1e-45 187.2 144 58.3
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.1e-45 187.2 146 54.8
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 2.5e-45 186.0 147 55.1
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 2.1e-44 183.0 160 51.9
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 2.1e-44 183.0 151 55.0
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 8.1e-44 181.0 149 56.4
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.4e-43 180.3 151 55.0
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 2.4e-43 179.5 160 55.0
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 5.5e-40 168.3 146 49.3
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 1.2e-39 167.2 164 47.6
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 4.6e-39 165.2 146 50.0
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.0e-38 164.1 146 49.3
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.9e-37 159.8 144 51.4
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 5.3e-35 151.8 144 45.8
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 3.3e-29 132.5 163 45.4
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 6.3e-28 128.3 143 44.8
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 2.0e-26 123.2 159 35.8
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 4.5e-26 122.1 158 43.7
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.5e-24 116.3 150 38.7
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.2e-23 114.0 69 73.9
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 8.8e-22 107.8 66 66.7
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 9.7e-21 104.4 157 37.6
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 1.3e-20 104.0 150 40.0
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 6.3e-20 101.7 157 36.3
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 9.1e-19 97.8 60 73.3
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.5e-18 97.1 58 77.6
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 1.0e-17 94.4 133 31.6
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 2.2e-17 93.2 69 60.9
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 9.4e-16 87.8 69 56.5
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 1.7e-12 77.0 164 29.9
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.6e-07 60.5 58 51.7
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 6.1e-07 58.5 87 40.2
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.8e-06 57.0 148 29.7


User provided reference genes

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