Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 8.8e-114 413.7 216 100.0
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 8.5e-93 344.0 218 84.4
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 2.1e-59 233.0 205 66.8
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 1.6e-30 137.1 203 44.8
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 3.0e-29 132.9 175 48.0
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 7.4e-28 128.3 196 44.4
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 2.1e-27 126.7 220 44.5
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.8e-27 126.3 196 43.9
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 1.4e-26 124.0 126 56.3
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 2.4e-26 123.2 209 44.0
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 6.9e-26 121.7 196 45.4
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 1.2e-25 120.9 210 41.4
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 2.0e-25 120.2 220 44.1
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 4.5e-25 119.0 163 45.4
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 9.9e-25 117.9 194 47.9
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 2.2e-24 116.7 198 44.9
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 2.9e-24 116.3 177 46.3
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 2.9e-24 116.3 174 47.1
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 6.4e-24 115.2 190 41.6
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 6.4e-24 115.2 203 44.3
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 1.4e-23 114.0 199 39.7
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 4.2e-23 112.5 251 39.4
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 1.2e-22 110.9 121 57.9
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 1.2e-22 110.9 213 39.0
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 2.1e-22 110.2 223 41.3
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 1.0e-21 107.8 195 40.5
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 1.8e-21 107.1 221 39.8
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 1.8e-21 107.1 194 45.4
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 3.9e-21 105.9 208 42.8
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 3.3e-20 102.8 214 36.0
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 3.3e-20 102.8 214 36.0
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 7.4e-20 101.7 157 38.2
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 2.1e-19 100.1 182 45.1
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 2.1e-19 100.1 186 44.1
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.2e-17 94.4 157 38.9
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.2e-17 94.4 175 40.6
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.2e-17 94.4 175 40.6
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.2e-17 94.4 175 40.6
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 1.2e-17 94.4 193 40.9
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 2.0e-17 93.6 157 41.4
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 2.6e-17 93.2 218 35.8
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 5.8e-17 92.0 179 38.0
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 7.6e-17 91.7 145 44.8
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 6.5e-16 88.6 185 37.8
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 4.2e-15 85.9 197 38.1
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 9.3e-15 84.7 193 38.3
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 2.7e-14 83.2 205 34.1
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 4.6e-14 82.4 186 42.5
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 4.6e-14 82.4 135 45.9
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 7.9e-14 81.6 134 46.3
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 1.3e-13 80.9 201 33.8
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 1.8e-13 80.5 205 34.1
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 2.3e-13 80.1 195 35.9
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 3.9e-13 79.3 106 46.2
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 3.9e-13 79.3 192 38.0
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 5.1e-13 79.0 121 47.1
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 5.1e-13 79.0 131 45.8
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 1.1e-12 77.8 116 48.3
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 1.5e-12 77.4 195 38.5
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 7.4e-12 75.1 174 35.6
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 1.3e-11 74.3 121 41.3
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 1.3e-11 74.3 167 38.3
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.3e-11 74.3 150 43.3
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 3.7e-11 72.8 183 33.9
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 1.8e-10 70.5 181 30.4
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 6.9e-10 68.6 177 37.9
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 9.0e-10 68.2 108 41.7
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 1.2e-09 67.8 160 36.2
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 1.5e-09 67.4 108 41.7
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 1.5e-09 67.4 108 41.7
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 2.0e-09 67.0 108 41.7
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 2.6e-09 66.6 108 41.7
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 3.4e-09 66.2 171 36.3
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 3.4e-09 66.2 173 34.7
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 3.4e-09 66.2 132 41.7
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 5.9e-09 65.5 84 53.6
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 7.6e-09 65.1 179 33.5
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 1.3e-08 64.3 89 49.4
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 2.9e-08 63.2 109 45.0
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 1.1e-07 61.2 185 33.0
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 1.4e-07 60.8 109 45.0
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 1.4e-07 60.8 109 45.0
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 1.4e-07 60.8 121 38.0
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 1.9e-07 60.5 120 38.3
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 1.9e-07 60.5 126 38.9
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 2.5e-07 60.1 140 37.1
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 3.2e-07 59.7 200 30.0
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 3.2e-07 59.7 113 43.4
GSVIVG01038640001 Vitis vinifera HOM05D003457 ORTHO05D009249 4.2e-07 59.3 60 53.3
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 5.5e-07 58.9 159 36.5
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 1.2e-06 57.8 76 46.1
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 1.2e-06 57.8 115 37.4
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 1.6e-06 57.4 131 35.1
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 2.1e-06 57.0 135 37.0
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 2.1e-06 57.0 100 45.0
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 2.7e-06 56.6 85 44.7
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 3.6e-06 56.2 55 49.1
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 4.6e-06 55.8 130 38.5
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 4.6e-06 55.8 83 43.4
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 4.6e-06 55.8 148 31.8
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 6.1e-06 55.5 80 42.5
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 6.1e-06 55.5 104 36.5
ECA233G2997 Erigeron canadensis HOM05D003457 ORTHO05D009249 7.9e-06 55.1 78 46.2


User provided reference genes

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