Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 4098.9 2132 100.0
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 3292.3 2165 80.6
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 2834.7 1947 77.9
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 2792.3 2172 70.0
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 2759.6 2177 69.1
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2753.8 2180 67.4
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2739.1 2177 68.1
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 2712.2 2170 68.4
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 2701.4 2178 67.0
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2670.2 2171 66.8
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2663.6 2195 66.7
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 2655.9 2170 66.8
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 2654.8 2171 66.9
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2646.3 2191 66.3
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 2639.0 2148 67.5
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 2633.2 2178 65.9
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2632.1 2200 65.5
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2625.9 2268 64.3
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 2621.7 2184 64.9
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2592.4 2175 64.0
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 2580.4 2199 63.5
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 2560.8 2215 63.8
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2556.6 2177 63.7
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 2534.6 2177 63.1
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 2514.6 2177 62.9
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 2487.6 2177 63.0
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 2476.8 2184 62.8
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 2469.5 2175 62.9
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 2453.7 2178 61.7
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 2440.2 2176 61.2
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 2432.9 2175 61.6
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 2410.6 1671 76.3
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 2408.6 2174 61.4
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 2400.5 2181 61.0
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 2374.4 2195 60.2
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 2359.7 2021 63.0
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 2358.6 2181 59.7
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 2330.1 2173 60.1
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 2326.2 2181 59.5
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 2310.8 2096 60.4
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 2275.7 2250 58.0
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 2275.7 2201 58.1
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 2272.3 2178 58.1
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 2269.2 2204 58.2
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2260.3 2179 57.9
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2252.6 2191 57.8
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 2243.4 2097 59.8
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 2226.4 2176 57.7
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 2197.2 2053 59.0
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 2191.0 2181 55.5
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 2164.8 1886 63.0
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 2153.6 1888 63.0
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 2147.9 2144 56.2
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 2137.5 2175 56.6
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 2126.7 2181 55.9
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 2112.0 2275 53.4
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 2093.5 2157 55.8
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 2090.1 1905 61.0
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 2053.1 2174 54.2
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 2034.2 2150 55.1
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1946.4 1864 58.4
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1936.0 2201 51.7
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1923.7 2179 52.5
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1914.4 2125 52.6
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1907.9 2094 51.8
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1899.0 2261 50.6
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1887.1 2023 53.4
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1879.0 1994 54.7
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1879.0 1971 55.1
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1749.6 1538 60.1
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1632.8 1747 53.6
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1593.9 1975 46.5
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1589.3 1672 55.3
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1529.2 1126 70.2
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1498.4 1699 52.3
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1484.5 1562 55.2
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1479.5 1695 51.9
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1470.7 1702 52.1
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1462.6 1808 46.6
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 0.0e+00 1348.6 2300 39.8
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 0.0e+00 1210.3 2270 36.6
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 0.0e+00 1179.5 1298 51.1
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1172.1 1021 65.2
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 0.0e+00 1171.0 1031 61.0
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 0.0e+00 1164.8 1952 39.1
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1129.4 1144 56.7
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 1091.6 958 60.9
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 6.3e-289 998.8 1130 53.3
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 4.4e-266 922.9 973 52.6
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 5.0e-262 909.4 1380 40.4
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 7.5e-250 869.0 507 87.4
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 2.2e-241 840.9 895 52.6
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 7.6e-210 736.1 2739 27.1
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 5.5e-208 729.9 504 72.8
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 1.4e-203 715.3 633 57.3
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 1.4e-195 688.7 1469 32.2
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 3.6e-159 567.8 413 71.9
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 3.7e-148 531.2 378 70.9
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 4.9e-124 451.1 526 55.7
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.9e-123 449.1 342 69.0
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 3.9e-121 441.4 358 66.5
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 3.1e-118 431.8 408 57.8
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 5.8e-117 427.6 407 57.0
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 2.7e-106 392.1 216 86.1
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 9.9e-101 373.6 216 81.9
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 6.0e-98 364.4 339 62.2
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 3.1e-94 352.1 230 74.3
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 1.4e-91 343.2 183 89.6
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 2.5e-80 305.8 552 39.3
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 1.4e-75 290.0 365 55.1
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 7.9e-74 284.3 304 63.5
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 4.7e-66 258.5 373 48.8
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 5.7e-64 251.5 266 55.6
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 1.2e-61 243.8 128 88.3
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 9.4e-59 234.2 153 75.8
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 4.4e-56 225.3 215 54.9
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 1.4e-49 203.8 201 65.2
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 8.2e-47 194.5 161 72.7
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.4e-46 193.0 127 77.2
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.1e-46 192.6 127 77.2
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 1.0e-44 187.6 161 70.2
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.1e-42 179.9 133 66.2
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 1.1e-35 157.5 141 67.4
CSS0002002 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.5e-35 157.1 73 95.9
CSS0008041 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.5e-35 157.1 73 95.9
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 7.2e-35 154.8 134 60.4
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.6e-34 153.7 331 44.7
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 3.1e-30 139.4 213 43.7
Actinidia21203 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.6e-29 137.1 64 95.3
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 4.3e-27 129.0 95 64.2
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 6.8e-25 121.7 177 48.0
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 3.7e-23 115.9 372 39.8
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 5.4e-22 112.1 85 68.2
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 8.0e-18 98.2 183 36.6
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 1.1e-17 97.8 65 72.3
CSS0032650 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.4e-17 97.4 57 80.7
Dinv00622 Davidia involucrata HOM05D004910 ORTHO05D006864 1.2e-16 94.4 79 60.8
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 2.0e-16 93.6 65 72.3
Nitab4.5_0011076g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 2.0e-16 93.6 55 80.0
ClCG00G006380 Citrullus lanatus HOM05D004910 ORTHO05D006864 7.5e-16 91.7 53 83.0
Phvul.010G039400 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 1.1e-09 71.2 55 65.5
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 1.4e-09 70.9 73 58.9
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 2.3e-09 70.1 55 63.6
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 8.9e-09 68.2 49 71.4
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 2.0e-08 67.0 54 61.1
Haze_15793 Corylus avellana HOM05D004910 ORTHO05D006864 5.8e-08 65.5 36 80.6
Gohir.D06G038000 Gossypium hirsutum HOM05D004910 ORTHO05D030909 8.3e-07 61.6 43 74.4


User provided reference genes

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