Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 1.7e-117 426.0 215 100.0
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 1.6e-30 137.1 182 44.0
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 1.6e-30 137.1 179 45.3
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 7.8e-30 134.8 180 42.8
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 7.8e-30 134.8 182 42.9
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 1.0e-29 134.4 178 43.8
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 7.3e-28 128.3 173 42.2
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 6.2e-27 125.2 144 49.3
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 1.1e-26 124.4 173 43.9
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 3.1e-26 122.9 106 58.5
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 3.1e-26 122.9 189 41.8
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 6.9e-26 121.7 190 40.0
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 6.9e-26 121.7 188 39.9
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 8.9e-26 121.3 187 41.7
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 1.5e-25 120.6 190 40.0
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 4.4e-25 119.0 176 43.8
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 7.6e-25 118.2 141 46.1
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 8.4e-24 114.8 159 40.3
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 8.4e-24 114.8 191 38.7
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 1.1e-23 114.4 136 42.6
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 1.9e-23 113.6 136 42.6
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 1.9e-23 113.6 186 37.1
Lj3g0008746 Lotus japonicus HOM05D007511 ORTHO05D003753 4.2e-23 112.5 126 49.2
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 2.7e-22 109.8 136 44.1
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 3.5e-22 109.4 128 47.7
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 4.6e-22 109.0 128 47.7
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 6.0e-22 108.6 203 34.5
Cpa.g.sc73.86 Carica papaya HOM05D007511 ORTHO05D003753 7.8e-22 108.2 199 37.2
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 1.7e-21 107.1 127 45.7
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 2.3e-21 106.7 128 46.9
CsaV3_2G011030 Cucumis sativus L. HOM05D007511 ORTHO05D003753 1.5e-20 104.0 165 36.4
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 5.6e-20 102.1 128 45.3
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 5.6e-20 102.1 201 33.3
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 9.6e-20 101.3 135 39.3
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 2.8e-19 99.8 193 34.7
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 2.8e-19 99.8 178 34.8
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 1.1e-18 97.8 135 42.2
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 3.1e-18 96.3 175 37.1
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 3.1e-18 96.3 145 37.9
QL04p052194 Quercus lobata HOM05D007511 ORTHO05D003753 9.0e-18 94.7 132 45.5
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 2.0e-17 93.6 179 30.2
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 2.0e-17 93.6 127 40.2
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 4.5e-17 92.4 202 32.2
vmacro13587 Vaccinium macrocarpon HOM05D007511 ORTHO05D003753 4.5e-17 92.4 176 35.2
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 1.3e-16 90.9 114 42.1
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 3.8e-16 89.4 161 36.6
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 3.8e-16 89.4 181 29.3
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 8.4e-16 88.2 130 41.5
Rhsim07G0046200 Rhododendron simsii HOM05D007511 ORTHO05D003753 8.4e-16 88.2 126 40.5
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 1.1e-15 87.8 161 32.9
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 1.9e-15 87.0 119 42.9
BcaB08g36759 Brassica carinata HOM05D007511 ORTHO05D003753 5.4e-15 85.5 152 35.5
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 5.4e-15 85.5 165 37.0
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 5.4e-15 85.5 137 37.2
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 7.1e-15 85.1 144 36.8
THA.LOC104802898 Tarenaya hassleriana HOM05D007511 ORTHO05D003753 7.1e-15 85.1 132 37.9
Rhsim01G0134200 Rhododendron simsii HOM05D007511 ORTHO05D003753 1.6e-14 84.0 158 32.9
Rhsim01G0134700 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.6e-14 84.0 161 34.2
Aqoxy5G00551 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 2.7e-14 83.2 187 32.1
BolC9t58796H Brassica oleracea HOM05D007511 ORTHO05D003753 2.7e-14 83.2 154 35.1
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 2.7e-14 83.2 174 33.9
Sopen10g009620 Solanum pennellii HOM05D007511 ORTHO05D025904 3.5e-14 82.8 82 46.3
AL6G28680 Arabidopsis lyrata HOM05D007511 ORTHO05D003753 4.6e-14 82.4 140 36.4
Carub.0006s1583 Capsella rubella HOM05D007511 ORTHO05D003753 4.6e-14 82.4 143 36.4
AT5G17590 Arabidopsis thaliana HOM05D007511 ORTHO05D003753 6.0e-14 82.0 134 38.8
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 6.0e-14 82.0 64 57.8
Solyc10g024480.1 Solanum lycopersicum HOM05D007511 ORTHO05D003753 7.9e-14 81.6 82 45.1
BcaC04g18776 Brassica carinata HOM05D007511 ORTHO05D003753 1.3e-13 80.9 154 34.4
C09p59570 Brassica napus HOM05D007511 ORTHO05D003753 1.3e-13 80.9 154 34.4
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 1.3e-13 80.9 137 35.0
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 1.3e-13 80.9 126 40.5
Nitab4.5_0004800g0110 Nicotiana tabacum HOM05D000001 ORTHO05D011953 1.8e-13 80.5 153 34.0
BcaC03g13529 Brassica carinata HOM05D007511 ORTHO05D003753 2.3e-13 80.1 125 40.0
C02p09200 Brassica napus HOM05D007511 ORTHO05D003753 2.3e-13 80.1 138 35.5
BolC2t06828H Brassica oleracea HOM05D007511 ORTHO05D003753 2.3e-13 80.1 125 40.0
HanXRQChr04g0119711 Helianthus annuus HOM05D007511 ORTHO05D003753 2.3e-13 80.1 177 32.2
Peaxi162Scf01343g00114 Petunia axillaris HOM05D007511 ORTHO05D003753 2.3e-13 80.1 177 30.5
PGSC0003DMG400043768 Solanum tuberosum HOM05D007511 ORTHO05D003753 3.9e-13 79.3 154 37.0
BraA10t44242Z Brassica rapa HOM05D007511 ORTHO05D003753 5.1e-13 79.0 138 37.7
A02p04350 Brassica napus HOM05D007511 ORTHO05D003753 6.7e-13 78.6 138 34.8
BraA02t05399Z Brassica rapa HOM05D007511 ORTHO05D003753 6.7e-13 78.6 138 34.8
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 6.7e-13 78.6 142 35.2
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 1.5e-12 77.4 149 32.9
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 1.9e-12 77.0 173 30.6
A10p21820 Brassica napus HOM05D007511 ORTHO05D003753 2.5e-12 76.6 151 35.1
AUR62034848 Chenopodium quinoa HOM05D001418 ORTHO05D003753 2.5e-12 76.6 177 29.9
CARHR195590 Cardamine hirsuta HOM05D007511 ORTHO05D003753 3.3e-12 76.3 138 33.3
Sopen01g032800 Solanum pennellii HOM05D007511 ORTHO05D003753 3.3e-12 76.3 154 36.4
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 4.3e-12 75.9 137 31.4
Migut.B01440 Erythranthe guttata HOM05D007511 ORTHO05D003753 5.6e-12 75.5 101 39.6
AUR62029588 Chenopodium quinoa HOM05D001418 ORTHO05D003753 9.6e-12 74.7 177 30.5
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 1.3e-11 74.3 131 35.1
Oeu024951.1 Olea europaea HOM05D007511 ORTHO05D003753 1.6e-11 73.9 67 46.3
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 2.1e-11 73.6 122 36.1
Oeu032775.1 Olea europaea HOM05D007511 ORTHO05D003753 3.6e-11 72.8 98 39.8
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 1.1e-10 71.2 177 28.8
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 4.0e-10 69.3 175 28.6
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 4.0e-10 69.3 77 37.7
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 5.3e-10 68.9 183 31.1
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 9.0e-10 68.2 66 45.5
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 9.0e-10 68.2 187 29.9
Hma1.2p1_0353F.1_g133330 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 1.2e-09 67.8 104 36.5
SGA_v2.0_scaffold5G03086 Striga asiatica HOM05D007511 ORTHO05D003753 1.2e-09 67.8 110 36.4
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.2e-09 67.8 98 34.7
Os12g0182000 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 1.5e-09 67.4 135 29.6
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 1.5e-09 67.4 66 43.9
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 1.5e-09 67.4 66 43.9
CiPaw.04G080200 Carya illinoinensis HOM05D001418 ORTHO05D003753 2.0e-09 67.0 199 27.6
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 3.4e-09 66.2 134 32.1
CiPaw.03G118600 Carya illinoinensis HOM05D001418 ORTHO05D003753 4.5e-09 65.9 190 27.4
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 4.5e-09 65.9 164 30.5
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 5.8e-09 65.5 70 38.6
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 5.8e-09 65.5 60 46.7
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 5.8e-09 65.5 70 40.0
Sc06g0005400 Simmondsia chinensis HOM05D001418 ORTHO05D003753 5.8e-09 65.5 171 29.2
Zm00001eb408450 Zea mays HOM05D001418 ORTHO05D003753 7.6e-09 65.1 158 31.0
Ah.06g190930 Amaranthus hybridus HOM05D001418 ORTHO05D003753 9.9e-09 64.7 205 30.2
Haze_25311 Corylus avellana HOM05D001418 ORTHO05D003753 9.9e-09 64.7 62 50.0
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 9.9e-09 64.7 70 38.6
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 9.9e-09 64.7 60 45.0
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 9.9e-09 64.7 68 41.2
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 1.3e-08 64.3 69 40.6
BcaB01g05209 Brassica carinata HOM05D007511 ORTHO05D003753 1.7e-08 63.9 106 33.0
A03p08430 Brassica napus HOM05D007511 ORTHO05D003753 1.7e-08 63.9 106 33.0
C03p09830 Brassica napus HOM05D007511 ORTHO05D003753 1.7e-08 63.9 106 33.0
BraA03t10166Z Brassica rapa HOM05D007511 ORTHO05D003753 1.7e-08 63.9 106 33.0
Haze_18313 Corylus avellana HOM05D001418 ORTHO05D003753 1.7e-08 63.9 203 28.1
CsaV3_2G019490 Cucumis sativus L. HOM05D001418 ORTHO05D003753 1.7e-08 63.9 70 37.1
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 2.2e-08 63.5 64 39.1
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 2.2e-08 63.5 87 34.5
CSS0038510 Camellia sinensis var. sinensis HOM05D007511 ORTHO05D003753 3.8e-08 62.8 175 30.3
Peaxi162Scf00245g00034 Petunia axillaris HOM05D030085 ORTHO05D025904 3.8e-08 62.8 140 31.4
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 4.9e-08 62.4 172 29.7
MD00G1091900 Malus domestica HOM05D001418 ORTHO05D003753 4.9e-08 62.4 172 31.4
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 4.9e-08 62.4 181 28.2
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 4.9e-08 62.4 70 38.6
AUR62000505 Chenopodium quinoa HOM05D001418 ORTHO05D003753 6.4e-08 62.0 211 28.0
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 6.4e-08 62.0 60 45.0
Cfa021634 Carpinus fangiana HOM05D001418 ORTHO05D003753 8.4e-08 61.6 62 48.4
Cfa021635 Carpinus fangiana HOM05D001418 ORTHO05D003753 8.4e-08 61.6 62 48.4
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 8.4e-08 61.6 60 45.0
BolC3t13471H Brassica oleracea HOM05D007511 ORTHO05D003753 1.1e-07 61.2 107 32.7
Phvul.009G155100 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 1.1e-07 61.2 64 37.5
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 1.1e-07 61.2 60 41.7
Phvul.010G032800 Phaseolus vulgaris HOM05D007511 ORTHO05D003753 1.4e-07 60.8 129 31.0
AUR62006850 Chenopodium quinoa HOM05D001418 ORTHO05D003753 2.4e-07 60.1 213 26.3
Glyma.04G210600 Glycine max HOM05D001418 ORTHO05D003753 4.2e-07 59.3 62 37.1
Gohir.D10G108200 Gossypium hirsutum HOM05D001418 ORTHO05D003753 4.2e-07 59.3 191 27.2
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 5.5e-07 58.9 58 37.9
Gohir.A11G057300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 5.5e-07 58.9 56 42.9
Gohir.D09G004300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 5.5e-07 58.9 60 45.0
Gohir.D11G061300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 5.5e-07 58.9 56 42.9
Gorai.006G005900 Gossypium raimondii HOM05D001418 ORTHO05D003753 5.5e-07 58.9 60 45.0
Lalb_Chr13g0290981 Lupinus albus HOM05D007511 ORTHO05D003753 5.5e-07 58.9 144 31.2
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 5.5e-07 58.9 60 38.3
VMungo0251G3540 Vigna mungo HOM05D001418 ORTHO05D003753 5.5e-07 58.9 59 44.1
Gohir.A09G005000 Gossypium hirsutum HOM05D001418 ORTHO05D003753 7.1e-07 58.5 175 28.6
Os11g0195700 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 9.3e-07 58.2 68 36.8
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 9.3e-07 58.2 61 41.0
Gorai.007G066200 Gossypium raimondii HOM05D001418 ORTHO05D003753 1.2e-06 57.8 56 41.1
Gorai.011G118700 Gossypium raimondii HOM05D001418 ORTHO05D003753 1.6e-06 57.4 187 25.1
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 2.1e-06 57.0 195 24.6
FAN19G0125 Fragaria x ananassa HOM05D001418 ORTHO05D003753 2.1e-06 57.0 96 34.4
Duzib187G1961 Durio zibethinus HOM05D001418 ORTHO05D003753 2.7e-06 56.6 60 40.0
FvH4_1g24680 Fragaria vesca HOM05D001418 ORTHO05D003753 2.7e-06 56.6 96 34.4
Glyma.08G001800 Glycine max HOM05D001418 ORTHO05D003753 2.7e-06 56.6 63 38.1
FAN26G3393 Fragaria x ananassa HOM05D001418 ORTHO05D003753 3.5e-06 56.2 93 33.3
Zm00001eb112650 Zea mays HOM05D001418 ORTHO05D003753 3.5e-06 56.2 57 35.1
arahy.Tifrunner.gnm1.ann1.QAD3X4 Arachis hypogaea HOM05D001418 ORTHO05D003753 6.0e-06 55.5 60 43.3


User provided reference genes

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