Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 9.2e-181 636.7 312 100.0
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 3.3e-146 521.9 313 80.8
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 2.1e-145 519.2 313 80.5
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 8.7e-123 444.1 307 69.1
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 2.6e-119 432.6 305 69.5
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 4.5e-119 431.8 306 68.0
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 1.9e-117 426.4 300 67.3
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 7.2e-117 424.5 297 69.0
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 2.6e-114 416.0 297 67.3
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 1.7e-113 413.3 306 66.0
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 1.8e-112 409.8 306 63.4
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 1.5e-111 406.8 311 64.0
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 7.7e-111 404.4 297 65.3
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 7.7e-111 404.4 293 66.6
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.7e-110 403.3 305 64.6
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 3.8e-110 402.1 296 64.9
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 5.0e-110 401.7 295 64.7
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 1.1e-109 400.6 295 65.8
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.2e-109 398.7 305 63.6
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 7.2e-109 397.9 309 63.4
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 1.6e-108 396.7 295 65.1
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.1e-108 394.8 305 63.6
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.1e-108 394.8 305 63.6
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 2.3e-107 392.9 294 65.6
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 1.1e-106 390.6 296 66.2
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 6.3e-105 384.8 303 64.0
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.4e-104 383.6 289 65.4
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 1.4e-104 383.6 280 66.1
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 1.4e-104 383.6 308 61.4
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 4.5e-103 378.6 300 62.0
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 2.3e-99 366.3 292 62.3
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 2.0e-98 363.2 296 59.8
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 3.7e-97 359.0 296 60.8
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 8.2e-97 357.8 283 61.8
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 1.3e-94 350.5 301 55.1
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 5.0e-94 348.6 308 55.2
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 1.5e-93 347.1 277 58.1
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 1.9e-93 346.7 307 53.7
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 3.2e-93 345.9 307 54.1
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 5.5e-93 345.1 295 56.9
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 2.7e-92 342.8 308 54.2
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 2.7e-92 342.8 277 58.5
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 4.7e-92 342.0 299 54.2
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.1e-92 341.7 249 66.7
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.0e-91 340.9 269 61.3
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 3.4e-90 335.9 301 55.1
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 7.5e-90 334.7 244 66.4
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 1.7e-89 333.6 310 52.9
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 9.1e-88 327.8 306 51.3
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 5.9e-87 325.1 287 56.4
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 1.1e-85 320.9 271 58.3
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 6.1e-84 315.1 311 49.2
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 5.2e-83 312.0 280 53.9
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 6.8e-83 311.6 305 50.2
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 8.8e-83 311.2 282 56.0
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 1.2e-82 310.8 304 52.0
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 2.8e-81 306.2 291 52.9
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 8.3e-81 304.7 308 49.4
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 1.2e-79 300.8 285 51.2
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 1.6e-79 300.4 230 65.2
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 1.5e-77 293.9 232 62.5
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 5.6e-77 292.0 294 51.7
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 2.3e-75 286.6 338 48.8
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 8.9e-75 284.6 266 54.5
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 5.7e-74 282.0 216 65.3
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 1.7e-73 280.4 310 48.1
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 1.8e-72 276.9 295 49.5
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 2.7e-71 273.1 286 49.0
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 1.0e-70 271.2 326 47.9
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 2.5e-69 266.5 278 48.6
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 3.3e-69 266.2 299 46.2
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 5.6e-69 265.4 184 69.6
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 5.6e-69 265.4 280 47.9
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 9.5e-69 264.6 184 69.6
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 2.1e-68 263.5 184 69.0
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 2.0e-66 256.9 242 52.1
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.4e-64 250.8 232 56.0
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 3.5e-63 246.1 185 61.1
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 2.6e-58 229.9 191 60.2
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 5.8e-58 228.8 168 68.5
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 8.1e-44 181.8 144 62.5
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 9.3e-24 115.2 195 36.4
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 1.1e-13 81.6 150 37.3


User provided reference genes

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