Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.5e-186 654.4 400 100.0
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.4e-53 214.5 386 44.8
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 5.5e-45 186.0 431 44.5
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.1e-44 184.1 253 54.2
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 4.4e-42 176.4 249 53.4
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 2.0e-39 167.5 437 44.2
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.9e-39 166.0 384 40.9
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 9.4e-37 158.7 420 39.3
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 8.0e-36 155.6 420 43.8
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.4e-35 154.8 522 35.6
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 3.3e-34 150.2 262 45.0
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 5.7e-34 149.4 281 39.9
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 7.5e-34 149.1 259 44.4
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 2.2e-33 147.5 464 41.4
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.1e-32 145.2 192 47.9
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 1.1e-32 145.2 271 43.2
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 1.4e-32 144.8 264 42.8
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 3.1e-32 143.7 269 44.2
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.2e-31 141.7 192 47.4
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.2e-31 141.7 205 47.8
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.2e-31 141.7 198 48.5
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 5.9e-31 139.4 404 36.9
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 7.7e-31 139.0 408 36.5
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.3e-30 138.3 209 49.3
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 2.2e-30 137.5 237 41.4
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 2.9e-30 137.1 191 49.2
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 2.9e-30 137.1 401 35.9
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 5.0e-30 136.3 260 41.2
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 1.1e-29 135.2 215 47.9
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 1.5e-29 134.8 243 40.3
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 1.6e-28 131.3 417 35.5
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 3.6e-28 130.2 197 48.2
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 6.1e-28 129.4 337 39.2
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.0e-26 124.4 340 35.3
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.7e-26 122.9 343 35.0
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 1.3e-25 121.7 259 40.5
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 2.2e-25 120.9 275 40.7
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.8e-25 119.8 275 37.1
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.8e-25 119.8 426 37.8
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-24 117.9 274 36.9
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 3.1e-24 117.1 274 37.2
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 3.1e-24 117.1 362 39.0
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 4.1e-24 116.7 197 45.7
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.1e-24 116.7 475 37.3
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 7.0e-24 115.9 475 37.3
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 7.0e-24 115.9 415 35.2
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 2.7e-23 114.0 242 35.5
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 1.0e-22 112.1 317 41.0
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 2.2e-22 110.9 446 37.2
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.9e-22 110.5 273 37.0
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.9e-22 110.5 273 37.0
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 3.8e-22 110.2 108 56.5
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 3.8e-22 110.2 128 50.0
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.5e-22 109.0 475 36.8
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.5e-21 108.2 495 35.4
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 3.2e-21 107.1 424 37.3
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 3.2e-21 107.1 434 30.6
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.2e-21 106.7 408 32.6
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.5e-21 106.3 403 33.3
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.2e-20 105.1 182 44.5
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 1.6e-20 104.8 418 33.5
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 3.6e-20 103.6 184 41.3
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.7e-20 103.2 412 38.6
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 6.1e-20 102.8 193 39.9
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 6.1e-20 102.8 252 42.5
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 1.0e-19 102.1 253 35.6
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.8e-19 101.3 216 39.4
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 1.8e-19 101.3 129 48.1
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.3e-19 100.9 406 29.6
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 6.8e-19 99.4 483 34.4
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 8.8e-19 99.0 180 43.3
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 8.8e-19 99.0 413 29.5
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 3.4e-18 97.1 410 38.0
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 4.4e-18 96.7 184 35.3
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 2.2e-17 94.4 231 34.2
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 2.2e-17 94.4 247 39.3
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 6.3e-17 92.8 284 33.1
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 6.3e-17 92.8 236 36.9
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 2.4e-16 90.9 241 34.0
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 2.4e-16 90.9 227 38.3
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 3.1e-16 90.5 172 39.0
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 9.2e-16 89.0 414 38.2
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 9.2e-16 89.0 187 36.9
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 1.6e-15 88.2 118 50.8
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 2.7e-15 87.4 148 41.2
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 3.5e-15 87.0 162 44.4
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 7.8e-15 85.9 235 33.6
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 7.8e-15 85.9 229 33.6
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 1.7e-14 84.7 157 42.0
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.7e-14 84.7 257 33.5
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 2.3e-14 84.3 137 40.1
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 2.9e-14 84.0 289 32.5
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 2.9e-14 84.0 119 45.4
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 2.9e-14 84.0 372 32.3
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.5e-13 81.6 231 36.4
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 1.9e-13 81.3 147 39.5
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 5.6e-13 79.7 225 33.3
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 5.6e-13 79.7 121 43.0
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 7.3e-13 79.3 436 31.7
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 9.5e-13 79.0 133 40.6
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 9.5e-13 79.0 233 30.5
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 1.2e-12 78.6 183 35.0
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 2.1e-12 77.8 166 35.5
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 2.1e-12 77.8 132 39.4
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 2.8e-12 77.4 136 41.9
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 3.6e-12 77.0 134 38.8
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 6.1e-12 76.3 442 34.2
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 1.4e-11 75.1 262 30.9
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 2.3e-11 74.3 183 37.2
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 2.3e-11 74.3 122 42.6
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 2.3e-11 74.3 183 37.2
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 3.0e-11 73.9 122 41.8
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 3.0e-11 73.9 119 41.2
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 3.0e-11 73.9 146 38.4
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 4.0e-11 73.6 172 34.9
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 4.0e-11 73.6 438 29.2
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 6.8e-11 72.8 183 36.1
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 6.8e-11 72.8 183 36.1
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 8.9e-11 72.4 267 28.8
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 8.9e-11 72.4 172 34.3
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 8.9e-11 72.4 164 34.1
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 8.9e-11 72.4 197 34.0
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 8.9e-11 72.4 244 31.6
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 8.9e-11 72.4 442 29.9
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 1.5e-10 71.6 127 37.8
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 2.6e-10 70.9 262 29.8
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.6e-10 70.9 169 31.4
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 5.7e-10 69.7 260 29.2
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 5.7e-10 69.7 260 29.2
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 5.7e-10 69.7 155 36.1
Sed0013414 Sechium edule HOM05D004242 ORTHO05D004349 7.5e-10 69.3 144 34.7
HPP92_023037 Vanilla planifolia HOM05D004242 ORTHO05D004349 7.5e-10 69.3 129 38.8
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 1.3e-09 68.6 265 30.2
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 1.7e-09 68.2 168 32.1
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.2e-09 67.8 144 33.3
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.2e-09 67.8 405 28.4
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.9e-09 66.6 155 31.6
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 6.4e-09 66.2 107 44.9
Glyma.16G021500 Glycine max HOM05D004242 ORTHO05D004349 6.4e-09 66.2 199 32.2
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 6.4e-09 66.2 128 35.2
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 1.1e-08 65.5 155 32.9
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.1e-08 65.5 155 31.0
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 1.4e-08 65.1 282 27.0
Lj8P558T21 Lonicera japonica HOM05D012621 ORTHO05D004349 2.4e-08 64.3 121 38.0
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 3.2e-08 63.9 410 28.5
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 3.2e-08 63.9 115 36.5
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 4.1e-08 63.5 121 38.0
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 5.4e-08 63.2 116 38.8
Lj9C255T10 Lonicera japonica HOM05D012621 ORTHO05D004349 5.4e-08 63.2 123 36.6
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 5.4e-08 63.2 115 36.5
SEGI_05135 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 5.4e-08 63.2 116 38.8
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 7.0e-08 62.8 258 28.3
Lj9C256T7 Lonicera japonica HOM05D012621 ORTHO05D004349 9.2e-08 62.4 117 38.5
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 1.2e-07 62.0 97 41.2
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 1.2e-07 62.0 403 26.1
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 2.0e-07 61.2 127 34.6
VMungo0331G0961 Vigna mungo HOM05D004242 ORTHO05D004349 2.7e-07 60.8 168 30.4
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 3.5e-07 60.5 142 32.4
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 4.6e-07 60.1 142 31.0
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 5.9e-07 59.7 97 40.2
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 5.9e-07 59.7 97 40.2
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 1.0e-06 58.9 133 30.8
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 1.0e-06 58.9 149 32.2
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 1.3e-06 58.5 121 43.0
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 1.7e-06 58.2 125 30.4
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 1.7e-06 58.2 125 36.0
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 2.3e-06 57.8 119 33.6
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 2.3e-06 57.8 102 38.2
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 3.0e-06 57.4 137 29.2
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.0e-06 57.4 250 27.6
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 3.0e-06 57.4 116 31.9
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 3.0e-06 57.4 105 37.1
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 3.0e-06 57.4 242 31.8
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 3.9e-06 57.0 126 34.9
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 3.9e-06 57.0 146 31.5
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 3.9e-06 57.0 134 29.1
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 5.0e-06 56.6 122 30.3
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.0e-06 56.6 130 33.8
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 6.6e-06 56.2 329 28.3
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 8.6e-06 55.8 170 28.8
CiPaw.02G042900 Carya illinoinensis HOM05D004242 ORTHO05D004349 8.6e-06 55.8 385 29.9
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 8.6e-06 55.8 141 30.5
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 8.6e-06 55.8 104 35.6


User provided reference genes

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