Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.4e-120 436.4 246 100.0
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.2e-71 273.9 276 60.1
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 7.1e-27 125.2 277 39.0
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 1.6e-23 114.0 116 52.6
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 3.6e-23 112.8 113 54.9
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 4.8e-23 112.5 108 56.5
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 1.5e-21 107.5 119 52.9
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 5.8e-21 105.5 115 54.8
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 4.9e-20 102.4 123 51.2
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 8.4e-20 101.7 107 52.3
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.1e-19 101.3 113 44.2
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.9e-19 100.5 113 51.3
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 4.2e-19 99.4 113 44.2
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 9.3e-19 98.2 111 50.5
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 2.7e-18 96.7 115 51.3
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 2.7e-18 96.7 115 47.8
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 2.7e-18 96.7 107 49.5
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.7e-18 96.7 114 48.2
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 7.9e-18 95.1 115 45.2
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 1.0e-17 94.7 111 46.8
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 1.3e-17 94.4 105 47.6
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.3e-17 94.4 105 50.5
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 1.8e-17 94.0 110 48.2
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.8e-17 94.0 118 46.6
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 2.3e-17 93.6 111 45.0
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 2.3e-17 93.6 104 49.0
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 3.0e-17 93.2 113 49.6
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 3.9e-17 92.8 108 50.9
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.5e-16 90.1 110 47.3
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 2.5e-16 90.1 113 45.1
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.3e-16 89.4 110 47.3
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.3e-16 89.4 110 47.3
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 5.6e-16 89.0 107 45.8
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 7.4e-16 88.6 109 45.9
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 6.2e-15 85.5 112 47.3
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 8.1e-15 85.1 107 47.7
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 8.1e-15 85.1 105 47.6
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 1.4e-14 84.3 109 45.9
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 1.4e-14 84.3 123 45.5
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.4e-14 84.3 121 42.1
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 3.1e-14 83.2 119 45.4
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.1e-14 83.2 119 45.4
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 4.0e-14 82.8 109 45.0
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 5.3e-14 82.4 122 45.9
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.2e-13 81.3 119 40.3
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.2e-13 81.3 119 40.3
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.2e-13 81.3 119 42.9
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 2.0e-13 80.5 105 42.9
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 2.6e-13 80.1 125 40.0
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.4e-13 79.7 107 41.1
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.4e-13 79.7 127 42.5
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 3.4e-13 79.7 108 43.5
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 7.6e-13 78.6 113 43.4
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 9.9e-13 78.2 123 41.5
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.9e-13 78.2 128 39.1
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 9.9e-13 78.2 108 42.6
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 2.2e-12 77.0 246 32.1
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 2.2e-12 77.0 110 44.5
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 2.9e-12 76.6 110 46.4
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 2.9e-12 76.6 109 42.2
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.8e-12 76.3 128 39.1
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 3.8e-12 76.3 108 41.7
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 4.9e-12 75.9 121 42.1
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 6.4e-12 75.5 104 39.4
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 8.4e-12 75.1 123 37.4
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 1.1e-11 74.7 126 38.9
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 1.4e-11 74.3 109 42.2
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.4e-11 74.3 125 40.8
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.4e-11 73.6 128 38.3
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.4e-11 73.6 126 40.5
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 3.2e-11 73.2 107 39.3
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.2e-11 73.2 112 42.0
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 3.2e-11 73.2 104 38.5
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 3.2e-11 73.2 119 37.0
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 4.2e-11 72.8 105 41.0
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 4.2e-11 72.8 106 42.5
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 4.2e-11 72.8 118 38.1
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 7.1e-11 72.0 111 43.2
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 1.2e-10 71.2 109 39.4
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 2.1e-10 70.5 128 38.3
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 2.7e-10 70.1 106 40.6
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 2.7e-10 70.1 113 42.5
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 2.7e-10 70.1 113 41.6
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 3.5e-10 69.7 108 39.8
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 3.5e-10 69.7 115 40.0
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.5e-10 69.7 113 37.2
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 4.6e-10 69.3 178 32.0
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 6.0e-10 68.9 114 35.1
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 7.9e-10 68.6 117 42.7
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.0e-09 68.2 105 41.9
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.0e-09 68.2 103 40.8
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 1.0e-09 68.2 109 38.5
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 1.0e-09 68.2 125 39.2
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 1.3e-09 67.8 125 35.2
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 1.3e-09 67.8 125 35.2
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 1.3e-09 67.8 110 39.1
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 1.8e-09 67.4 125 34.4
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 2.3e-09 67.0 125 34.4
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.3e-09 67.0 104 41.3
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 3.0e-09 66.6 119 37.8
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 3.0e-09 66.6 110 37.3
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 3.9e-09 66.2 112 40.2
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 3.9e-09 66.2 107 37.4
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 3.9e-09 66.2 103 39.8
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 5.1e-09 65.9 108 38.9
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 5.1e-09 65.9 123 34.1
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 5.1e-09 65.9 101 42.6
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 5.1e-09 65.9 133 37.6
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 5.1e-09 65.9 113 37.2
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 6.7e-09 65.5 122 34.4
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.1e-08 64.7 113 36.3
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.5e-08 64.3 110 34.5
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 1.5e-08 64.3 110 35.5
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 1.5e-08 64.3 110 35.5
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 1.5e-08 64.3 105 41.9
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.9e-08 63.9 105 37.1
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 2.5e-08 63.5 114 37.7
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 2.5e-08 63.5 103 40.8
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 2.5e-08 63.5 114 35.1
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 3.3e-08 63.2 103 35.9
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.3e-08 63.2 117 33.3
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 3.3e-08 63.2 110 38.2
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 3.3e-08 63.2 124 37.1
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 4.3e-08 62.8 106 35.8
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 4.3e-08 62.8 106 35.8
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.6e-08 62.4 124 35.5
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 9.6e-08 61.6 103 39.8
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 9.6e-08 61.6 116 37.9
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 1.6e-07 60.8 119 34.5
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.6e-07 60.8 103 38.8
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 1.6e-07 60.8 111 36.9
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 2.8e-07 60.1 105 37.1
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 3.7e-07 59.7 114 36.8
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 6.2e-07 58.9 125 32.8
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 6.2e-07 58.9 102 35.3
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 8.1e-07 58.5 125 32.8
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 8.1e-07 58.5 110 39.1
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 8.1e-07 58.5 110 41.8
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 1.1e-06 58.2 125 32.8
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 1.1e-06 58.2 104 34.6
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 1.1e-06 58.2 103 36.9
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 1.4e-06 57.8 125 32.0
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.4e-06 57.8 131 35.9
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 1.4e-06 57.8 102 35.3
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 1.4e-06 57.8 100 37.0
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 1.8e-06 57.4 106 34.0
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 1.8e-06 57.4 123 36.6
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 2.4e-06 57.0 197 31.5
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 3.1e-06 56.6 101 36.6
Sed0027906 Sechium edule HOM05D030996 ORTHO05D004349 3.1e-06 56.6 116 32.8
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 4.0e-06 56.2 109 33.9
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 6.9e-06 55.5 105 32.4
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 6.9e-06 55.5 104 34.6
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 9.0e-06 55.1 101 37.6


User provided reference genes

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