Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G041000 Carya illinoinensis HOM05D005676 ORTHO05D007375 0.0e+00 1832.8 934 100.0
Cfa003798 Carpinus fangiana HOM05D005676 ORTHO05D007375 0.0e+00 1309.3 940 73.5
Haze_15661 Corylus avellana HOM05D005676 ORTHO05D007375 0.0e+00 1251.1 927 71.5
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 0.0e+00 1217.6 942 69.4
Dinv32595 Davidia involucrata HOM05D005676 ORTHO05D007375 2.2e-286 989.2 1037 53.7
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 2.9e-286 988.8 945 57.4
Potri.014G099100 Populus trichocarpa HOM05D005676 ORTHO05D007375 6.8e-280 967.6 948 57.8
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 2.6e-279 965.7 987 54.5
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 4.6e-276 954.9 946 56.6
Sabra14G0072700 Salix brachista HOM05D005676 ORTHO05D007375 2.3e-275 952.6 948 56.6
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 6.6e-275 951.0 937 57.0
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 6.6e-275 951.0 1002 52.3
Prupe.2G189000 Prunus persica HOM05D005676 ORTHO05D007375 1.1e-274 950.3 954 56.5
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 2.5e-274 949.1 946 56.3
Atru.chr5.673 Acer truncatum HOM05D005676 ORTHO05D007375 4.7e-273 944.9 945 57.1
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.3e-266 922.2 940 55.9
Manes.01G246200 Manihot esculenta HOM05D005676 ORTHO05D007375 5.6e-266 921.4 945 55.0
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.6e-265 918.7 940 55.6
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 6.2e-265 917.9 940 55.6
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 8.1e-265 917.5 941 55.0
Lalb_Chr17g0342721 Lupinus albus HOM05D005676 ORTHO05D007375 1.2e-263 913.7 1022 52.2
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.0e-263 912.9 946 54.3
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 4.4e-263 911.8 940 55.2
Lj3g0008614 Lotus japonicus HOM05D005676 ORTHO05D007375 3.2e-261 905.6 1022 52.1
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 6.0e-260 901.4 972 54.0
CSS0030996 Camellia sinensis var. sinensis HOM05D005676 ORTHO05D007375 8.1e-257 891.0 1082 49.2
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 2.5e-250 869.4 1029 50.6
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 2.0e-247 859.8 1029 50.2
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 2.6e-247 859.4 933 52.4
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 2.6e-247 859.4 922 52.1
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 7.6e-247 857.8 953 52.3
Sed0007378 Sechium edule HOM05D005676 ORTHO05D007375 3.2e-245 852.4 957 52.2
GSVIVG01027152001 Vitis vinifera HOM05D005676 ORTHO05D007375 1.6e-244 850.1 941 53.6
MELO3C006021.2 Cucumis melo HOM05D005676 ORTHO05D007375 2.1e-244 849.7 949 51.7
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 7.9e-244 847.8 947 51.3
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 4.8e-241 838.6 1013 49.6
Glyma.16G024100 Glycine max HOM05D005676 ORTHO05D007375 1.1e-240 837.4 1126 47.0
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 5.3e-240 835.1 953 50.8
COL.COLO4_06282 Corchorus olitorius HOM05D005676 ORTHO05D007375 6.9e-240 834.7 935 51.9
TPR.G16793 Trifolium pratense HOM05D005676 ORTHO05D007375 2.9e-238 829.3 1028 48.1
Phvul.010G114600 Phaseolus vulgaris HOM05D005676 ORTHO05D007375 7.9e-236 821.2 1096 47.3
Cpa.g.sc96.24 Carica papaya HOM05D005676 ORTHO05D007375 3.0e-235 819.3 855 53.1
Sc01g0002640 Simmondsia chinensis HOM05D005676 ORTHO05D007375 1.3e-233 813.9 1036 46.4
MSTRG.17345 Avicennia marina HOM05D005676 ORTHO05D007375 7.9e-228 794.7 968 47.8
Ciclev10023383m.g Citrus clementina HOM05D005676 ORTHO05D007375 1.3e-225 787.3 932 50.8
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 1.2e-223 780.8 1020 46.2
VMungo0331G0849 Vigna mungo HOM05D005676 ORTHO05D007375 2.2e-222 776.5 1172 44.0
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 3.8e-222 775.8 971 47.5
AL5G44340 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 1.2e-220 770.8 969 47.7
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 2.7e-220 769.6 911 49.2
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 4.6e-220 768.8 1165 42.5
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 6.1e-220 768.5 1041 45.7
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 1.3e-219 767.3 1131 43.4
Ca_23531_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 2.3e-219 766.5 948 48.3
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 7.4e-218 761.5 997 46.9
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 1.3e-217 760.8 976 47.1
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 1.7e-217 760.4 1002 45.4
Peaxi162Scf00786g00018 Petunia axillaris HOM05D005676 ORTHO05D007375 1.4e-216 757.3 996 46.5
Carub.0005s2852 Capsella rubella HOM05D005676 ORTHO05D007375 5.3e-216 755.4 964 46.0
Sopen01g039730 Solanum pennellii HOM05D005676 ORTHO05D007375 9.1e-216 754.6 1036 45.1
Sp5g01590 Schrenkiella parvula HOM05D005676 ORTHO05D007375 1.5e-215 753.8 976 46.8
BraA07t30214Z Brassica rapa HOM05D005676 ORTHO05D007375 2.6e-215 753.1 956 47.9
A07p25740 Brassica napus HOM05D005676 ORTHO05D007375 3.4e-215 752.7 956 47.9
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 5.9e-215 751.9 990 46.7
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 1.0e-214 751.1 992 47.1
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 3.8e-214 749.2 1036 45.1
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 2.5e-213 746.5 952 47.9
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 2.5e-213 746.5 952 47.9
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 9.4e-213 744.6 988 46.3
Lj9A598G65 Lonicera japonica HOM05D005676 ORTHO05D007375 2.3e-211 740.0 968 47.7
Hma1.2p1_0139F.1_g063260 Hydrangea macrophylla HOM05D005676 ORTHO05D007375 8.8e-211 738.0 635 60.9
Migut.B01876 Erythranthe guttata HOM05D005676 ORTHO05D007375 9.7e-210 734.6 954 46.9
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 1.7e-209 733.8 968 46.1
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 2.8e-209 733.0 952 47.3
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 1.1e-208 731.1 1129 42.4
SalBow3G4648 Salvia bowleyana HOM05D005676 ORTHO05D007375 1.8e-208 730.3 1003 45.5
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 4.1e-208 729.2 1135 41.5
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 1.5e-207 727.2 941 46.8
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 3.4e-207 726.1 940 46.6
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 3.4e-207 726.1 896 49.7
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 3.8e-206 722.6 1132 41.3
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 4.7e-204 715.7 944 45.7
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 2.6e-202 709.9 1113 41.5
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 1.3e-198 697.6 939 47.1
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 1.7e-198 697.2 1112 40.9
SGA_v2.0_scaffold5G03020 Striga asiatica HOM05D005676 ORTHO05D007375 1.5e-197 694.1 958 45.8
CARHR172110 Cardamine hirsuta HOM05D005676 ORTHO05D007375 4.7e-196 689.1 939 45.3
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 4.8e-193 679.1 1013 42.1
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 7.0e-184 648.7 899 44.6
unitig_899.g14797 Utricularia gibba HOM05D005676 ORTHO05D007375 2.7e-183 646.7 958 42.7
BcaC08g45164 Brassica carinata HOM05D005676 ORTHO05D007375 1.4e-160 571.2 832 42.5
ATR0602G016 Amborella trichopoda HOM05D005676 ORTHO05D007375 5.1e-126 456.4 914 36.0
Gohir.D11G101600 Gossypium hirsutum HOM05D005676 ORTHO05D007375 1.2e-122 445.3 592 47.8
AT5G28400 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 2.2e-108 397.9 772 37.8
Glyma.07G055432 Glycine max HOM05D005676 ORTHO05D007375 2.0e-106 391.3 284 70.1
AL5G43810 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 1.8e-91 341.7 493 41.4
Gohir.D11G101550 Gossypium hirsutum HOM05D005676 ORTHO05D007375 5.5e-88 330.1 216 73.1
MD07G1150200 Malus domestica HOM05D005676 ORTHO05D007375 7.2e-88 329.7 517 43.9
Actinidia20244 Actinidia chinensis HOM05D005676 ORTHO05D007375 1.2e-87 328.9 766 33.6
AT5G28320 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 1.6e-82 312.0 847 32.2
MD07G1150100 Malus domestica HOM05D005676 ORTHO05D007375 5.7e-77 293.5 178 77.5
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 7.5e-77 293.1 646 32.8
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 1.8e-75 288.5 645 31.5
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 2.7e-74 284.6 468 37.4
Oeu007893.1 Olea europaea HOM05D005676 ORTHO05D007375 1.7e-73 282.0 556 35.8
FAN06G2271 Fragaria x ananassa HOM05D005676 ORTHO05D007375 4.6e-50 204.1 505 33.7
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 7.1e-43 180.3 441 31.1
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 1.1e-30 139.8 163 42.9
CBR_g23443 Chara braunii HOM05D005676 ORTHO05D007375 1.2e-29 136.3 557 22.6
FAN03G3457 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.1e-27 129.8 347 33.1
Cpa.g.sc96.22 Carica papaya HOM05D005676 ORTHO05D007375 6.2e-23 114.0 86 68.6
TPR.G23509 Trifolium pratense HOM05D005676 ORTHO05D007375 3.1e-22 111.7 133 48.9
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 4.0e-22 111.3 422 27.5
ATR0602G131 Amborella trichopoda HOM05D005676 ORTHO05D007375 9.0e-22 110.2 74 73.0
FvH4_7g16530 Fragaria vesca HOM05D005676 ORTHO05D007375 1.2e-21 109.8 62 82.3
FvH4_7g16560 Fragaria vesca HOM05D005676 ORTHO05D007375 2.0e-21 109.0 245 34.7
FAN06G1105 Fragaria x ananassa HOM05D005676 ORTHO05D007375 5.8e-21 107.5 245 34.3
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 5.4e-19 100.9 447 27.1
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 7.3e-16 90.5 144 32.6
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 7.3e-16 90.5 144 32.6
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 1.1e-14 86.7 113 37.2
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 5.3e-14 84.3 134 34.3
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 1.2e-13 83.2 133 35.3
Ca_23165_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 4.5e-13 81.3 132 40.9
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 5.8e-13 80.9 254 26.8
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 9.9e-13 80.1 354 24.3
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 1.3e-12 79.7 155 29.0
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 1.3e-12 79.7 168 28.6
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 1.7e-12 79.3 118 38.1
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 1.7e-12 79.3 138 34.1
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 4.9e-12 77.8 254 27.6
ATR0796G152 Amborella trichopoda HOM05D007342 ORTHO05D009252 8.4e-12 77.0 124 36.3
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 8.4e-12 77.0 122 36.9
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 8.4e-12 77.0 131 32.1
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 1.1e-11 76.6 133 30.1
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 1.4e-11 76.3 176 29.5
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 1.4e-11 76.3 173 27.7
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 3.2e-11 75.1 143 32.9
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 3.2e-11 75.1 165 29.1
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 4.2e-11 74.7 120 32.5
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 4.2e-11 74.7 112 32.1
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 4.2e-11 74.7 112 32.1
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 5.4e-11 74.3 120 32.5
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 5.4e-11 74.3 120 32.5
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 7.1e-11 73.9 139 30.9
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 7.1e-11 73.9 139 30.2
TAR633G2120 Trochodendron aralioides HOM05D007342 ORTHO05D009252 7.1e-11 73.9 228 26.3
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 1.6e-10 72.8 176 26.7
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 2.1e-10 72.4 131 31.3
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 2.7e-10 72.0 113 32.7
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 4.6e-10 71.2 124 31.5
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 4.6e-10 71.2 112 32.1
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 6.0e-10 70.9 181 27.1
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 1.0e-09 70.1 123 29.3
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 1.3e-09 69.7 289 24.2
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 1.3e-09 69.7 125 28.8
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 1.8e-09 69.3 120 30.8
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 3.0e-09 68.6 118 30.5
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 5.1e-09 67.8 166 25.3
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 5.1e-09 67.8 328 25.0
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 5.1e-09 67.8 323 25.1
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 5.1e-09 67.8 328 25.0
FAN06G0289 Fragaria x ananassa HOM05D005676 ORTHO05D007375 6.7e-09 67.4 36 80.6
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 6.7e-09 67.4 125 32.0
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 1.9e-08 65.9 118 29.7
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 3.3e-08 65.1 118 28.8
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 3.3e-08 65.1 107 32.7
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 1.3e-07 63.2 290 24.5
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 1.3e-07 63.2 109 31.2
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 3.7e-07 61.6 228 23.7
SEGI_23790 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 1.4e-06 59.7 75 38.7
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 1.8e-06 59.3 131 24.4
FvH4_7g16531 Fragaria vesca HOM05D005676 ORTHO05D007375 4.0e-06 58.2 105 34.3
THA.LOC104810667 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 6.9e-06 57.4 92 31.5


User provided reference genes

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