Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 1.6e-222 775.8 406 100.0
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 6.0e-172 607.8 410 79.8
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 7.5e-167 590.9 410 78.0
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 1.1e-154 550.4 409 73.8
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 4.4e-151 538.5 406 72.2
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 5.8e-151 538.1 410 73.2
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 1.9e-149 533.1 410 70.7
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 4.1e-149 531.9 410 71.5
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 3.0e-147 525.8 410 70.7
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 3.0e-147 525.8 410 70.7
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 3.0e-147 525.8 417 69.3
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 1.9e-146 523.1 411 69.6
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 5.6e-146 521.5 411 68.6
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 7.3e-146 521.2 411 70.1
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 3.6e-145 518.8 408 72.1
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 3.1e-144 515.8 409 69.9
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.2e-143 513.8 414 68.8
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 3.4e-143 512.3 410 68.8
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 5.8e-143 511.5 397 70.5
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 5.8e-143 511.5 410 68.0
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 2.7e-140 502.7 407 67.3
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 7.8e-140 501.1 412 67.7
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 5.1e-139 498.4 417 67.1
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 8.7e-139 497.7 411 66.4
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 1.9e-138 496.5 406 68.2
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.5e-138 496.1 354 77.4
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 4.3e-138 495.4 406 68.2
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 7.3e-138 494.6 416 64.9
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 2.1e-137 493.0 417 64.3
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 8.1e-137 491.1 404 68.1
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 1.2e-135 487.3 403 67.0
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 2.0e-135 486.5 419 64.4
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 3.4e-135 485.7 424 64.2
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 4.5e-135 485.3 413 63.7
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 5.8e-135 485.0 419 64.2
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 2.2e-134 483.0 454 61.5
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 3.8e-134 482.3 419 64.2
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 3.8e-134 482.3 434 60.8
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.2e-132 477.2 409 66.0
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 3.5e-132 475.7 400 64.5
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.8e-131 473.4 401 65.6
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 1.8e-131 473.4 410 63.9
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 3.9e-131 472.2 420 62.4
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 5.1e-131 471.9 401 65.8
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 1.5e-130 470.3 398 64.3
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 9.6e-130 467.6 400 65.2
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 1.6e-129 466.8 414 61.8
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 1.6e-129 466.8 392 64.8
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 4.8e-129 465.3 402 63.9
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 4.8e-129 465.3 406 63.3
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 1.1e-128 464.2 414 62.3
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 2.4e-128 463.0 409 61.1
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 2.4e-128 463.0 413 64.4
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.1e-128 462.6 426 59.9
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.0e-128 462.2 407 63.6
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 9.0e-128 461.1 401 63.6
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 1.5e-127 460.3 412 60.9
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.0e-127 459.9 428 63.3
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 3.4e-127 459.1 409 65.0
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 7.6e-127 458.0 433 58.7
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 9.9e-127 457.6 385 64.4
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.8e-126 455.7 385 64.2
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 6.4e-126 454.9 401 64.1
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 1.4e-125 453.8 407 64.1
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 1.2e-124 450.7 415 59.8
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 1.2e-124 450.7 410 61.5
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.8e-123 446.8 381 61.9
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.9e-123 445.7 443 56.9
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 6.7e-123 444.9 333 72.4
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 1.1e-122 444.1 414 62.8
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.1e-122 444.1 361 65.1
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 9.0e-120 434.5 356 66.9
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.5e-119 433.7 380 66.1
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 1.7e-118 430.3 414 60.1
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.2e-118 429.9 375 66.7
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 2.5e-117 426.4 407 59.2
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 6.7e-115 418.3 421 59.4
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 8.7e-115 417.9 500 50.0
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 1.9e-114 416.8 404 57.2
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 8.2e-113 411.4 384 63.3
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 5.3e-112 408.7 405 57.8
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 9.0e-112 407.9 409 55.5
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.4e-111 406.0 498 50.8
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 3.8e-110 402.5 412 55.3
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 6.5e-110 401.7 393 56.0
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 6.5e-110 401.7 401 57.9
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 8.5e-110 401.4 403 55.3
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 1.2e-108 397.5 404 56.9
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 1.8e-107 393.7 402 56.7
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 1.8e-107 393.7 404 56.2
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 3.0e-107 392.9 406 56.9
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 1.1e-106 391.0 414 55.1
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 3.3e-106 389.4 399 56.4
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 2.2e-105 386.7 404 55.4
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.4e-104 384.0 389 57.3
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 4.1e-104 382.5 392 55.4
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 2.0e-103 380.2 403 54.8
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 2.2e-102 376.7 409 52.8
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.9e-102 376.3 403 54.8
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 2.5e-101 373.2 429 50.3
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.6e-100 370.5 402 53.0
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 4.4e-98 362.5 403 52.9
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 2.2e-97 360.1 377 59.2
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 4.5e-95 352.4 331 62.8
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 4.2e-93 345.9 423 49.6
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 6.7e-91 338.6 401 52.9
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 8.2e-89 331.6 292 66.4
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 5.0e-86 322.4 367 54.2
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 1.7e-78 297.4 405 47.7
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.4e-74 283.1 349 51.3
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 7.0e-72 275.4 317 50.5
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 3.3e-69 266.5 356 49.2
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 4.0e-67 259.6 243 57.6
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 6.8e-67 258.8 331 49.5
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 1.7e-65 254.2 318 49.7
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 4.9e-65 252.7 266 58.6
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 1.1e-61 241.5 226 59.7
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.1e-61 241.5 428 39.5
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 3.9e-46 189.9 329 40.7
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.9e-38 163.3 90 77.8
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 2.0e-34 151.0 130 60.8
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.6e-34 150.6 167 55.1
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 7.6e-34 149.1 149 55.7
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 7.6e-34 149.1 149 55.7
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.2e-31 141.7 355 32.7
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 3.3e-29 133.7 143 55.9
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 9.9e-26 122.1 290 32.8
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 1.0e-22 112.1 98 70.4
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.6e-20 104.8 73 80.8
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 4.8e-20 103.2 149 47.7
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 4.9e-17 93.2 179 41.3
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 7.1e-16 89.4 65 73.8
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 1.6e-15 88.2 122 44.3
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 3.7e-12 77.0 39 76.9
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.4e-11 75.1 103 44.7
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 7.6e-10 69.3 91 47.3
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 9.3e-08 62.4 42 81.0
MELO3C030860.2 Cucumis melo HOM05D005133 ORTHO05D006685 3.0e-06 57.4 47 70.2
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 6.7e-06 56.2 74 51.4
Sp4g28240 Schrenkiella parvula HOM05D005133 ORTHO05D006685 8.7e-06 55.8 52 51.9


User provided reference genes

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