Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G036100 Carya illinoinensis HOM05D005192 ORTHO05D006023 4.9e-88 327.8 168 100.0
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 3.3e-68 261.9 161 81.4
Duzib177G0632 Durio zibethinus HOM05D005192 ORTHO05D006023 8.2e-67 257.3 162 78.4
Thecc.05G232400 Theobroma cacao HOM05D005192 ORTHO05D006023 5.3e-66 254.6 162 77.8
Cpa.g.sc73.77 Carica papaya HOM05D005192 ORTHO05D006023 9.0e-66 253.8 161 80.1
Cc02_g26360 Coffea canephora HOM05D005192 ORTHO05D006023 3.4e-65 251.9 161 76.4
Gohir.A13G082000 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.3e-64 250.0 162 74.7
Prupe.2G101300 Prunus persica HOM05D005192 ORTHO05D006023 2.9e-64 248.8 161 77.0
Gorai.013G112500 Gossypium raimondii HOM05D005192 ORTHO05D006023 3.8e-64 248.4 162 74.1
TWI32G1299 Tripterygium wilfordii HOM05D005192 ORTHO05D006023 3.8e-64 248.4 161 74.5
Gorai.007G248800 Gossypium raimondii HOM05D005192 ORTHO05D006023 8.4e-64 247.3 162 75.9
Eucgr.E01765 Eucalyptus grandis HOM05D005192 ORTHO05D006023 1.4e-63 246.5 161 77.0
Sc26g0002010 Simmondsia chinensis HOM05D005192 ORTHO05D006023 1.4e-63 246.5 161 74.5
COL.COLO4_08549 Corchorus olitorius HOM05D005192 ORTHO05D006023 1.9e-63 246.1 162 72.8
Duzib128G1721 Durio zibethinus HOM05D005192 ORTHO05D006023 1.9e-63 246.1 161 75.2
Dinv43977 Davidia involucrata HOM05D005192 ORTHO05D006023 2.5e-63 245.7 161 75.2
Gohir.D13G100100 Gossypium hirsutum HOM05D005192 ORTHO05D006023 2.5e-63 245.7 162 72.8
GSVIVG01011324001 Vitis vinifera HOM05D005192 ORTHO05D006023 3.2e-63 245.4 161 77.0
Atru.chr2.1677 Acer truncatum HOM05D005192 ORTHO05D006023 4.2e-63 245.0 161 75.8
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 4.2e-63 245.0 161 75.2
Gohir.D11G235900 Gossypium hirsutum HOM05D005192 ORTHO05D006023 5.5e-63 244.6 162 75.3
Hma1.2p1_0353F.1_g133370 Hydrangea macrophylla HOM05D005192 ORTHO05D006023 7.2e-63 244.2 161 77.0
Actinidia05822 Actinidia chinensis HOM05D005192 ORTHO05D006023 3.5e-62 241.9 161 75.2
CAN.G700.32 Capsicum annuum HOM05D005192 ORTHO05D006023 4.6e-62 241.5 162 69.1
THA.LOC104805728 Tarenaya hassleriana HOM05D005192 ORTHO05D006023 7.9e-62 240.7 162 72.2
Manes.09G132000 Manihot esculenta HOM05D005192 ORTHO05D006023 1.0e-61 240.4 164 72.0
CiPaw.01G068900 Carya illinoinensis HOM05D005192 ORTHO05D006023 1.3e-61 240.0 163 76.7
Nitab4.5_0004800g0050 Nicotiana tabacum HOM05D005192 ORTHO05D006023 1.3e-61 240.0 161 72.7
Solyc01g081190.4 Solanum lycopersicum HOM05D005192 ORTHO05D006023 1.3e-61 240.0 161 72.0
Hund26918 Selenicereus undatus HOM05D005192 ORTHO05D006023 3.9e-61 238.4 161 72.7
PGSC0003DMG400001805 Solanum tuberosum HOM05D005192 ORTHO05D006023 8.7e-61 237.3 160 71.9
arahy.Tifrunner.gnm1.ann1.8Z97YG Arachis hypogaea HOM05D005192 ORTHO05D006023 2.5e-60 235.7 167 70.7
Potri.013G072600 Populus trichocarpa HOM05D005192 ORTHO05D006023 2.5e-60 235.7 164 71.3
arahy.Tifrunner.gnm1.ann1.SX2T07 Arachis hypogaea HOM05D005192 ORTHO05D006023 3.3e-60 235.3 167 70.7
Haze_15802 Corylus avellana HOM05D005192 ORTHO05D006023 7.4e-60 234.2 152 78.3
SGA_v2.0_scaffold98G29401 Striga asiatica HOM05D005192 ORTHO05D006023 1.3e-59 233.4 160 70.6
BcaC03g15075 Brassica carinata HOM05D005192 ORTHO05D006023 1.6e-59 233.0 156 75.6
BcaC03g15076 Brassica carinata HOM05D005192 ORTHO05D006023 1.6e-59 233.0 156 75.6
A02p15850 Brassica napus HOM05D005192 ORTHO05D006023 1.6e-59 233.0 156 75.6
BolC2t08702H Brassica oleracea HOM05D005192 ORTHO05D006023 1.6e-59 233.0 156 75.6
Nitab4.5_0005106g0020 Nicotiana tabacum HOM05D005192 ORTHO05D006023 1.6e-59 233.0 162 71.6
C02p26310 Brassica napus HOM05D005192 ORTHO05D006023 3.7e-59 231.9 156 75.0
Peaxi162Scf00592g00452 Petunia axillaris HOM05D005192 ORTHO05D006023 3.7e-59 231.9 156 72.4
Aa31LG2G2090 Aethionema arabicum HOM05D005192 ORTHO05D006023 6.3e-59 231.1 165 72.7
CANSAT01G0826 Cannabis sativa HOM05D005192 ORTHO05D006023 8.2e-59 230.7 166 68.7
CiPaw.01G069000 Carya illinoinensis HOM05D005192 ORTHO05D006023 8.2e-59 230.7 160 75.6
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 1.1e-58 230.3 161 68.9
vmacro13584 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 1.8e-58 229.6 163 69.9
Carub.0012s0005 Capsella rubella HOM05D005192 ORTHO05D006023 3.1e-58 228.8 156 73.1
BcaB05g24444 Brassica carinata HOM05D005192 ORTHO05D006023 4.1e-58 228.4 156 74.4
Sabra13G0062500 Salix brachista HOM05D005192 ORTHO05D006023 4.1e-58 228.4 164 70.7
vmacro13581 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 4.1e-58 228.4 163 70.6
CARHR056260 Cardamine hirsuta HOM05D005192 ORTHO05D006023 5.3e-58 228.0 156 72.4
FvH4_7g07320 Fragaria vesca HOM05D005192 ORTHO05D006023 5.3e-58 228.0 162 69.8
FAN10G1987 Fragaria x ananassa HOM05D005192 ORTHO05D006023 5.3e-58 228.0 162 69.8
Lj9C612T3 Lonicera japonica HOM05D005192 ORTHO05D006023 6.9e-58 227.6 162 68.5
AUR62014514 Chenopodium quinoa HOM05D000462 ORTHO05D006023 9.0e-58 227.3 161 67.7
FAN01G2901 Fragaria x ananassa HOM05D005192 ORTHO05D006023 1.2e-57 226.9 162 70.4
RcHm_v2.0_Chr1g0340081 Rosa chinensis HOM05D005192 ORTHO05D006023 1.2e-57 226.9 161 69.6
AL2G19260 Arabidopsis lyrata HOM05D005192 ORTHO05D006023 1.5e-57 226.5 156 71.8
Sp5g18870 Schrenkiella parvula HOM05D005192 ORTHO05D006023 1.5e-57 226.5 156 74.4
Aqoxy3G01990 Aquilegia oxysepala HOM05D005192 ORTHO05D006023 2.6e-57 225.7 168 67.9
FAN03G1308 Fragaria x ananassa HOM05D005192 ORTHO05D006023 2.6e-57 225.7 162 69.8
AT1G64850 Arabidopsis thaliana HOM05D005192 ORTHO05D006023 3.4e-57 225.3 156 71.2
MSTRG.17088 Avicennia marina HOM05D005192 ORTHO05D006023 7.7e-57 224.2 160 69.4
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 1.0e-56 223.8 160 70.0
Nitab4.5_0000050g0110 Nicotiana tabacum HOM05D005192 ORTHO05D006023 1.3e-56 223.4 152 72.4
Lsat_1_v5_gn_4_42301 Lactuca sativa HOM05D005192 ORTHO05D006023 8.5e-56 220.7 161 61.5
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 8.5e-56 220.7 153 71.9
Lalb_Chr07g0194821 Lupinus albus HOM05D005192 ORTHO05D006023 1.1e-55 220.3 159 67.9
Phvul.010G038600 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 1.1e-55 220.3 160 68.8
Dinv43532 Davidia involucrata HOM05D005192 ORTHO05D006023 1.9e-55 219.5 161 67.1
ECA234G1488 Erigeron canadensis HOM05D005192 ORTHO05D006023 1.9e-55 219.5 161 63.4
Migut.B01443 Erythranthe guttata HOM05D005192 ORTHO05D006023 1.9e-55 219.5 160 65.0
Glyma.03G098300 Glycine max HOM05D005192 ORTHO05D006023 1.9e-55 219.5 160 68.1
Gohir.A11G222400 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.9e-55 219.5 161 70.2
PSO782G4714 Papaver somniferum HOM05D005192 ORTHO05D006023 3.2e-55 218.8 165 65.5
Rhsim07G0045800 Rhododendron simsii HOM05D005192 ORTHO05D006023 3.2e-55 218.8 152 72.4
TAR629G1606 Trochodendron aralioides HOM05D005192 ORTHO05D006023 4.2e-55 218.4 165 67.9
HanXRQChr11g0330951 Helianthus annuus HOM05D005192 ORTHO05D006023 5.5e-55 218.0 161 64.0
Lj3g0015892 Lotus japonicus HOM05D005192 ORTHO05D006023 5.5e-55 218.0 164 67.1
Medtr8g009870 Medicago truncatula HOM05D005192 ORTHO05D006023 2.1e-54 216.1 160 66.9
Nitab4.5_0004594g0120 Nicotiana tabacum HOM05D005192 ORTHO05D006023 3.6e-54 215.3 144 73.6
Ca_25887_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 6.1e-54 214.5 151 70.9
VMungo0331G1938 Vigna mungo HOM05D005192 ORTHO05D006023 6.1e-54 214.5 160 67.5
Oeu060687.1 Olea europaea HOM05D005192 ORTHO05D006023 1.0e-53 213.8 157 63.7
PSO063G5995 Papaver somniferum HOM05D005192 ORTHO05D006023 1.0e-53 213.8 167 62.3
Solyc10g061870.1 Solanum lycopersicum HOM05D005192 ORTHO05D006023 1.4e-53 213.4 152 71.1
Psat4g215840 Pisum sativum HOM05D005192 ORTHO05D006023 1.8e-53 213.0 151 70.2
Sopen01g032770 Solanum pennellii HOM05D005192 ORTHO05D006023 1.8e-53 213.0 144 72.2
ATR0829G090 Amborella trichopoda HOM05D005192 ORTHO05D006023 2.3e-53 212.6 163 66.3
FAN06G2558 Fragaria x ananassa HOM05D005192 ORTHO05D006023 3.0e-53 212.2 152 68.4
DCAR_015753 Daucus carota HOM05D005192 ORTHO05D006023 8.8e-53 210.7 152 67.8
Nn3g21169 Nelumbo nucifera HOM05D005192 ORTHO05D006023 1.1e-52 210.3 165 64.8
Lalb_Chr12g0210171 Lupinus albus HOM05D005192 ORTHO05D006023 1.5e-52 209.9 155 68.4
AUR62038020 Chenopodium quinoa HOM05D005192 ORTHO05D006023 2.5e-52 209.1 193 56.0
Ah.05g177160 Amaranthus hybridus HOM05D005192 ORTHO05D006023 3.3e-52 208.8 161 65.8
DCAR_029189 Daucus carota HOM05D005192 ORTHO05D006023 2.8e-51 205.7 161 60.9
ClCG05G002570 Citrullus lanatus HOM05D005192 ORTHO05D006023 3.1e-50 202.2 166 62.0
HPP92_014406 Vanilla planifolia HOM05D005192 ORTHO05D006023 2.6e-49 199.1 165 60.6
Sed0012289 Sechium edule HOM05D005192 ORTHO05D006023 2.2e-48 196.1 162 61.7
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 2.9e-48 195.7 150 64.0
unitig_61.g26432 Utricularia gibba HOM05D005192 ORTHO05D006023 6.5e-48 194.5 161 57.8
Sed0020247 Sechium edule HOM05D005192 ORTHO05D006023 1.1e-47 193.7 164 60.4
MD02G1236300 Malus domestica HOM05D005192 ORTHO05D006023 1.4e-47 193.4 152 63.8
Nn3g21165 Nelumbo nucifera HOM05D005192 ORTHO05D006023 2.5e-47 192.6 164 60.4
Os04g0601400 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 9.4e-47 190.7 168 58.3
Zm00001eb071820 Zea mays HOM05D005192 ORTHO05D006023 9.4e-47 190.7 163 59.5
TAR629G2600 Trochodendron aralioides HOM05D005192 ORTHO05D006023 2.7e-46 189.1 165 58.8
CsaV3_3G010010 Cucumis sativus L. HOM05D005192 ORTHO05D006023 3.6e-46 188.7 162 58.6
unitig_0.g1357 Utricularia gibba HOM05D005192 ORTHO05D006023 5.1e-45 184.9 143 60.8
arahy.Tifrunner.gnm1.ann1.9NJ9Q0 Arachis hypogaea HOM05D005192 ORTHO05D006023 8.8e-45 184.1 163 60.1
Oeu041522.2 Olea europaea HOM05D005192 ORTHO05D006023 6.3e-43 177.9 123 70.7
Phvul.010G038700 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 6.3e-43 177.9 164 51.2
Glyma.03G098400 Glycine max HOM05D005192 ORTHO05D006023 8.2e-43 177.6 160 55.0
CDE04G3605 Ceratophyllum demersum HOM05D005192 ORTHO05D006023 1.2e-41 173.7 168 50.6
Glyma.07G123500 Glycine max HOM05D005192 ORTHO05D006023 4.5e-41 171.8 123 70.7
MELO3C006223.2 Cucumis melo HOM05D005192 ORTHO05D006023 6.5e-40 167.9 189 47.1
Peaxi162Scf00250g00049 Petunia axillaris HOM05D005192 ORTHO05D006023 7.2e-39 164.5 126 65.9
ClCG05G002560 Citrullus lanatus HOM05D005192 ORTHO05D006023 5.2e-37 158.3 167 55.7
Lj7A558T36 Lonicera japonica HOM05D005192 ORTHO05D006023 9.7e-36 154.1 109 68.8
MELO3C006222.2 Cucumis melo HOM05D005192 ORTHO05D006023 3.7e-35 152.1 171 50.3
CsaV3_3G010000 Cucumis sativus L. HOM05D005192 ORTHO05D006023 7.7e-33 144.4 167 48.5
Mapoly0125s0044 Marchantia polymorpha HOM05D005192 ORTHO05D006023 1.1e-31 140.6 158 43.7
SMO137G0328 Selaginella moellendorffii HOM05D005192 ORTHO05D006023 1.9e-31 139.8 146 46.6
AagrBONN_evm.TU.Sc2ySwM_117.2458 Anthoceros agrestis HOM05D005192 ORTHO05D006023 2.7e-30 136.0 158 44.3
Lj9A615G51 Lonicera japonica HOM05D005192 ORTHO05D006023 2.6e-28 129.4 90 70.0
QL04p052584 Quercus lobata HOM05D005192 ORTHO05D006023 3.4e-28 129.0 87 78.2
QL04p052587 Quercus lobata HOM05D005192 ORTHO05D006023 2.2e-27 126.3 75 76.0
ATR0829G133 Amborella trichopoda HOM05D005192 ORTHO05D006023 3.5e-25 119.0 162 41.4
PGSC0003DMG400013231 Solanum tuberosum HOM05D005192 ORTHO05D006023 4.5e-25 118.6 86 73.3
Thhalv10011151m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 3.8e-24 115.5 80 75.0
Pp3c12_14230 Physcomitrium patens HOM05D005192 ORTHO05D006023 1.1e-23 114.0 152 41.4
Pp3c3_35520 Physcomitrium patens HOM05D005192 ORTHO05D006023 5.5e-23 111.7 153 39.2
SEGI_22185 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.2e-22 110.5 174 35.1
SEGI_22584 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.2e-22 110.5 174 35.1
SEGI_29719 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.2e-22 110.5 174 35.1
Thhalv10010860m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 8.0e-22 107.8 82 63.4
MBI04_g12223_MAGBIO Magnolia biondii HOM05D013086 ORTHO05D006023 1.2e-17 94.0 146 39.7
HPP92_003408 Vanilla planifolia HOM05D005192 ORTHO05D006023 6.6e-16 88.2 153 34.6
MD07G1078400 Malus domestica HOM05D005192 ORTHO05D006023 6.1e-14 81.6 51 70.6
SEGI_19507 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.0e-13 80.9 175 29.1
SEGI_29788 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.8e-13 80.1 173 32.9
SEGI_41139 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.8e-13 80.1 175 29.1
SEGI_33126 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 5.2e-13 78.6 175 29.1
Os04g0601500 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 1.7e-11 73.6 146 33.6
Zm00001eb430320 Zea mays HOM05D005192 ORTHO05D006023 2.4e-10 69.7 159 27.7
CBR_g41233 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-10 69.3 106 40.6
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 6.6e-08 61.6 135 30.4
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 2.5e-07 59.7 119 31.1
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 3.3e-07 59.3 158 25.9
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 3.3e-07 59.3 164 31.1
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 4.3e-07 58.9 138 27.5
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 4.3e-07 58.9 141 27.0
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 9.5e-07 57.8 124 30.6
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 9.5e-07 57.8 130 32.3
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 1.2e-06 57.4 125 30.4
EL10Ac1g00772 Beta vulgaris HOM05D002637 ORTHO05D009046 1.2e-06 57.4 125 32.0
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 1.2e-06 57.4 124 29.8
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 1.2e-06 57.4 125 28.0
AUR62023418 Chenopodium quinoa HOM05D000001 ORTHO05D009896 1.6e-06 57.0 148 29.7
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 1.6e-06 57.0 124 31.5
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 1.6e-06 57.0 124 30.6
Duzib147G1684 Durio zibethinus HOM05D002637 ORTHO05D009046 2.1e-06 56.6 145 29.0
Phvul.010G051600 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 2.1e-06 56.6 159 25.2
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 2.8e-06 56.2 119 30.3
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 3.6e-06 55.8 147 27.2
MD07G1104600 Malus domestica HOM05D002637 ORTHO05D009046 3.6e-06 55.8 135 27.4
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 4.7e-06 55.5 124 29.8
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 4.7e-06 55.5 165 28.5
Dinv43628 Davidia involucrata HOM05D002637 ORTHO05D009046 4.7e-06 55.5 125 28.8
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 4.7e-06 55.5 140 27.9
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 6.2e-06 55.1 119 27.7
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 8.0e-06 54.7 157 25.5
vmacro21056 Vaccinium macrocarpon HOM05D002637 ORTHO05D009046 8.0e-06 54.7 124 28.2
VMungo0331G2001 Vigna mungo HOM05D002637 ORTHO05D009046 8.0e-06 54.7 137 24.8


User provided reference genes

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