Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 4.8e-134 481.1 234 100.0
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 3.5e-100 368.6 234 78.6
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 6.0e-100 367.9 234 78.2
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.8e-96 356.3 234 74.4
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 7.6e-95 350.9 234 74.4
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 1.3e-94 350.1 235 75.3
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.7e-94 349.7 227 74.0
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.7e-94 349.7 227 74.0
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 4.9e-94 348.2 235 72.3
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 8.4e-94 347.4 234 73.5
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 8.4e-94 347.4 227 73.6
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.4e-93 346.7 227 74.4
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 2.4e-93 345.9 234 73.5
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 9.2e-93 344.0 235 72.3
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.2e-92 343.6 227 72.2
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.6e-92 343.2 235 72.3
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 2.1e-92 342.8 227 72.7
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 2.7e-92 342.4 227 71.8
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 2.7e-92 342.4 227 73.1
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 3.5e-92 342.0 235 71.9
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 3.5e-92 342.0 234 73.9
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 3.5e-92 342.0 235 71.9
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 4.6e-92 341.7 228 72.4
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 7.8e-92 340.9 234 74.4
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 1.3e-91 340.1 235 74.5
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 1.7e-91 339.7 232 69.8
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 3.0e-91 339.0 236 70.8
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 3.0e-91 339.0 236 70.8
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 3.9e-91 338.6 234 73.9
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 5.1e-91 338.2 236 70.8
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 6.6e-91 337.8 235 71.5
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 1.5e-90 336.7 227 70.9
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.9e-90 336.3 235 71.1
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 2.5e-90 335.9 234 70.1
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 4.3e-90 335.1 234 70.1
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 7.3e-90 334.3 227 70.0
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 7.3e-90 334.3 227 70.0
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 7.3e-90 334.3 234 71.4
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 9.6e-90 334.0 227 72.2
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 9.6e-90 334.0 227 74.4
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.6e-89 333.2 227 70.5
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.1e-89 332.8 234 69.7
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.1e-89 332.8 227 74.0
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 2.1e-89 332.8 235 70.6
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.8e-89 332.4 232 69.4
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.6e-89 332.0 235 70.6
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 2.4e-88 329.3 234 70.1
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 2.4e-88 329.3 234 68.8
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.0e-88 328.6 234 69.2
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 4.0e-88 328.6 235 68.9
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.9e-88 327.8 247 66.0
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 6.9e-88 327.8 237 68.8
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 8.9e-88 327.4 257 65.8
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 8.9e-88 327.4 236 69.9
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 3.4e-87 325.5 234 69.2
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 4.4e-87 325.1 236 69.5
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 4.4e-87 325.1 236 69.5
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 4.4e-87 325.1 251 69.7
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.4e-87 325.1 247 65.2
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 9.9e-87 323.9 225 70.2
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.7e-86 323.2 227 71.4
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.2e-86 322.8 238 68.9
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.9e-86 322.4 235 68.5
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.8e-86 322.0 237 68.8
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.8e-86 322.0 237 68.8
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 1.1e-85 320.5 231 68.8
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.4e-85 320.1 227 71.4
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 1.4e-85 320.1 235 67.2
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.9e-85 319.7 235 68.1
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.9e-85 319.7 235 68.5
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 3.2e-85 318.9 236 68.2
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 3.2e-85 318.9 212 73.1
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.2e-85 318.9 235 67.7
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 4.2e-85 318.5 238 68.1
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 4.2e-85 318.5 232 68.1
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 7.1e-85 317.8 241 67.2
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 9.3e-85 317.4 239 66.9
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 9.3e-85 317.4 235 66.4
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.2e-84 317.0 231 68.8
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.2e-84 317.0 222 70.3
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 1.6e-84 316.6 227 68.3
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.6e-84 316.6 238 69.3
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.6e-84 316.6 238 69.3
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 2.7e-84 315.8 234 68.8
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 3.5e-84 315.5 238 68.5
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 6.0e-84 314.7 235 67.2
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.3e-83 313.5 236 67.4
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.3e-83 313.5 228 67.5
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 3.0e-83 312.4 238 66.8
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 3.0e-83 312.4 238 66.8
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 3.9e-83 312.0 240 65.8
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.9e-83 312.0 235 67.7
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 5.1e-83 311.6 232 66.4
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 8.7e-83 310.8 238 66.8
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.1e-82 310.5 235 67.7
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.1e-82 310.5 235 67.2
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.9e-82 309.7 235 66.8
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 2.5e-82 309.3 234 65.8
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 2.5e-82 309.3 240 66.2
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 2.5e-82 309.3 217 71.4
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 3.3e-82 308.9 231 68.0
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 9.6e-82 307.4 235 66.0
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.3e-81 307.0 235 67.2
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 2.1e-81 306.2 238 67.6
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 6.9e-80 301.2 229 67.2
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.2e-79 300.4 235 64.7
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 2.0e-79 299.7 231 65.4
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 3.4e-79 298.9 239 64.4
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 9.9e-79 297.4 236 62.7
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.7e-78 296.6 233 63.5
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 2.2e-78 296.2 236 64.8
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 4.9e-78 295.0 235 64.7
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 4.9e-78 295.0 229 64.2
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 3.2e-77 292.4 244 60.7
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 3.5e-76 288.9 235 60.9
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 4.6e-76 288.5 239 62.8
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 1.0e-75 287.3 212 67.0
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 2.3e-75 286.2 257 58.8
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 2.3e-75 286.2 209 66.5
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 4.8e-73 278.5 235 59.6
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 4.5e-71 271.9 239 60.3
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 5.8e-71 271.6 228 60.1
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 9.3e-69 264.2 187 70.6
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.6e-68 263.5 227 62.1
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 8.7e-67 257.7 234 58.5
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 8.7e-67 257.7 182 70.9
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.9e-66 256.5 186 68.3
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 4.8e-65 251.9 214 60.7
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 7.1e-61 238.0 226 56.6
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.9e-58 229.9 213 51.6
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 9.6e-58 227.6 161 70.2
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.4e-56 223.8 164 69.5
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.8e-56 223.4 195 61.5
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 2.1e-52 209.9 159 63.5
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 5.7e-50 201.8 186 58.6
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 6.3e-49 198.4 214 49.1
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.1e-48 197.6 192 56.8
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 1.5e-47 193.7 212 48.1
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 8.5e-46 188.0 129 68.2
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 8.5e-46 188.0 147 68.0
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 9.4e-45 184.5 216 45.8
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 4.6e-44 182.2 216 45.4
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 8.8e-43 177.9 184 52.7
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 6.3e-41 171.8 134 60.4
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 2.7e-36 156.4 211 41.2
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 5.2e-35 152.1 90 80.0
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 4.1e-32 142.5 93 72.0
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 8.5e-30 134.8 163 47.2
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 2.7e-28 129.8 161 46.6
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.7e-25 120.6 101 55.4
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.8e-24 117.1 92 64.1
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.9e-22 109.8 209 34.4
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.1e-21 107.8 73 74.0
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.2e-21 106.3 82 68.3
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 7.2e-21 105.1 90 60.0
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.7e-20 103.2 74 70.3
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.1e-20 102.1 73 71.2
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 8.0e-20 101.7 67 74.6
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.0e-19 101.3 74 68.9
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 1.8e-19 100.5 196 31.6
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.2e-17 93.6 70 68.6
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 6.3e-17 92.0 74 62.2
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.1e-16 89.4 59 78.0
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.5e-13 80.9 104 39.4
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.0e-11 74.7 52 76.9
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 2.3e-11 73.6 221 29.0
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 1.3e-09 67.8 53 71.7
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 2.3e-06 57.0 51 56.9
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 2.9e-06 56.6 40 62.5
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 6.6e-06 55.5 53 56.6


User provided reference genes

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