Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G035400 Carya illinoinensis HOM05D008092 ORTHO05D010277 2.3e-139 498.8 243 100.0
CiPaw.03G041800 Carya illinoinensis HOM05D008092 ORTHO05D010277 1.9e-133 479.2 243 96.7
QL02p075225 Quercus lobata HOM05D008092 ORTHO05D010277 1.7e-97 359.8 241 73.9
QL93p1842_0091 Quercus lobata HOM05D008092 ORTHO05D010277 1.1e-96 357.1 241 73.4
Cfa007393 Carpinus fangiana HOM05D008092 ORTHO05D010277 2.0e-90 336.3 211 79.1
CiPaw.04G027500 Carya illinoinensis HOM05D008092 ORTHO05D010277 7.1e-88 327.8 238 71.4
TAR374G1215 Trochodendron aralioides HOM05D008092 ORTHO05D010277 1.0e-70 270.8 249 56.2
Dinv33463 Davidia involucrata HOM05D008092 ORTHO05D010277 1.1e-69 267.3 248 60.1
Atru.chr6.2355 Acer truncatum HOM05D008092 ORTHO05D010277 1.1e-64 250.8 250 57.2
Manes.17G115000 Manihot esculenta HOM05D008092 ORTHO05D010277 5.7e-61 238.4 246 54.1
GSVIVG01032429001 Vitis vinifera HOM05D008092 ORTHO05D010277 1.1e-59 234.2 231 55.0
CANSAT64G0606 Cannabis sativa HOM05D008092 ORTHO05D010277 5.3e-59 231.9 244 50.8
Thecc.04G015000 Theobroma cacao HOM05D008092 ORTHO05D010277 1.4e-56 223.8 238 49.6
Gorai.011G095100 Gossypium raimondii HOM05D008092 ORTHO05D010277 7.2e-56 221.5 238 50.0
Gohir.A10G102700 Gossypium hirsutum HOM05D008092 ORTHO05D010277 9.4e-56 221.1 238 49.6
Prupe.3G289300 Prunus persica HOM05D008092 ORTHO05D010277 1.2e-55 220.7 239 53.1
Gohir.D10G086900 Gossypium hirsutum HOM05D008092 ORTHO05D010277 2.1e-55 219.9 238 49.6
Duzib187G1326 Durio zibethinus HOM05D008092 ORTHO05D010277 6.7e-54 214.9 239 49.4
COL.COLO4_29084 Corchorus olitorius HOM05D008092 ORTHO05D010277 2.6e-53 213.0 233 46.8
Actinidia06006 Actinidia chinensis HOM05D008092 ORTHO05D010277 3.3e-53 212.6 244 50.0
Haze_14716 Corylus avellana HOM05D008092 ORTHO05D010277 1.7e-52 210.3 181 66.9
Haze_14721 Corylus avellana HOM05D008092 ORTHO05D010277 2.8e-52 209.5 152 73.7
CSS0000484 Camellia sinensis var. sinensis HOM05D008092 ORTHO05D010277 6.3e-52 208.4 246 52.4
vmacro05852 Vaccinium macrocarpon HOM05D008092 ORTHO05D010277 3.1e-51 206.1 243 49.0
CSS0015151 Camellia sinensis var. sinensis HOM05D008092 ORTHO05D010277 1.2e-50 204.1 246 51.6
MD17G1030500 Malus domestica HOM05D008092 ORTHO05D010277 1.7e-49 200.3 238 47.9
TWI36G1451 Tripterygium wilfordii HOM05D008092 ORTHO05D010277 1.2e-47 194.1 199 55.8
Phvul.004G010900 Phaseolus vulgaris HOM05D008092 ORTHO05D010277 7.4e-45 184.9 177 55.9
Cpa.g.sc108.51 Carica papaya HOM05D008092 ORTHO05D010277 8.2e-44 181.4 235 47.2
Glyma.05G005000 Glycine max HOM05D008092 ORTHO05D010277 1.8e-43 180.3 233 45.9
PGR083G2137 Punica granatum HOM05D008092 ORTHO05D010277 7.7e-42 174.9 232 46.1
Rhsim10G0018500 Rhododendron simsii HOM05D008092 ORTHO05D010277 7.7e-42 174.9 279 39.8
MBI10_g33304_MAGBIO Magnolia biondii HOM05D008092 ORTHO05D010277 1.0e-41 174.5 216 45.8
Cc00_g25440 Coffea canephora HOM05D008092 ORTHO05D010277 2.9e-41 172.9 175 50.9
arahy.Tifrunner.gnm1.ann1.KZ8L38 Arachis hypogaea HOM05D008092 ORTHO05D010277 8.5e-41 171.4 176 54.0
arahy.Tifrunner.gnm1.ann1.M07V8F Arachis hypogaea HOM05D008092 ORTHO05D010277 8.5e-41 171.4 176 54.0
Lalb_Chr02g0156941 Lupinus albus HOM05D008092 ORTHO05D010277 1.5e-40 170.6 188 51.1
Nitab4.5_0000118g0190 Nicotiana tabacum HOM05D008092 ORTHO05D010277 1.2e-39 167.5 209 46.4
Psat1g056120 Pisum sativum HOM05D008092 ORTHO05D010277 1.6e-39 167.2 208 48.1
Lsat_1_v5_gn_4_183520 Lactuca sativa HOM05D008092 ORTHO05D010277 1.8e-38 163.7 253 40.3
MBI10_g44380_MAGBIO Magnolia biondii HOM05D008092 ORTHO05D010277 6.8e-38 161.8 216 44.4
VMungo0464G1885 Vigna mungo HOM05D008092 ORTHO05D010277 1.5e-37 160.6 245 42.4
Lj2g0022146 Lotus japonicus HOM05D008092 ORTHO05D010277 3.4e-37 159.5 184 51.1
Medtr6g005430 Medicago truncatula HOM05D008092 ORTHO05D010277 8.3e-36 154.8 231 43.3
CsaV3_3G042670 Cucumis sativus L. HOM05D008092 ORTHO05D010277 1.0e-33 147.9 248 38.7
Glyma.19G005600 Glycine max HOM05D008092 ORTHO05D010277 5.0e-33 145.6 166 48.2
TPR.G14075 Trifolium pratense HOM05D008092 ORTHO05D010277 1.1e-32 144.4 170 48.2
Sc03g0007590 Simmondsia chinensis HOM05D008092 ORTHO05D010277 2.5e-32 143.3 238 38.7
HanXRQChr09g0255051 Helianthus annuus HOM05D008092 ORTHO05D010277 1.8e-30 137.1 157 47.1
PSO017G5173 Papaver somniferum HOM05D008092 ORTHO05D010277 3.7e-28 129.4 236 38.1
PSO478G3237 Papaver somniferum HOM05D008092 ORTHO05D010277 4.8e-28 129.0 236 38.1
CDE02G4384 Ceratophyllum demersum HOM05D008092 ORTHO05D010277 8.3e-28 128.3 218 35.8
Eucgr.I01759 Eucalyptus grandis HOM05D008092 ORTHO05D010277 8.3e-28 128.3 119 54.6
DCAR_021714 Daucus carota HOM05D008092 ORTHO05D010277 2.4e-27 126.7 145 47.6
Nn3g16773 Nelumbo nucifera HOM05D008092 ORTHO05D010277 9.5e-24 114.8 240 33.3
Eucgr.I01763 Eucalyptus grandis HOM05D008092 ORTHO05D010277 4.7e-23 112.5 117 51.3
ECA232G1487 Erigeron canadensis HOM05D008092 ORTHO05D010277 1.0e-22 111.3 217 37.3
HPP92_003083 Vanilla planifolia HOM05D008092 ORTHO05D010277 3.0e-22 109.8 163 41.1
Nitab4.5_0002306g0010 Nicotiana tabacum HOM05D008092 ORTHO05D010277 2.7e-18 96.7 125 47.2
Oeu063467.1 Olea europaea HOM05D008092 ORTHO05D010277 5.9e-18 95.5 227 35.7
MELO3C009977.2 Cucumis melo HOM05D008092 ORTHO05D010277 8.6e-17 91.7 190 36.8
TPR.G15211 Trifolium pratense HOM05D008092 ORTHO05D010277 1.8e-14 84.0 119 42.9
TPR.G11017 Trifolium pratense HOM05D008092 ORTHO05D010277 2.3e-09 67.0 40 70.0
Mapoly0035s0098 Marchantia polymorpha HOM05D008092 ORTHO05D010277 5.6e-08 62.4 118 31.4
Pp3c2_13540 Physcomitrium patens HOM05D008092 ORTHO05D010277 1.8e-06 57.4 111 31.5


User provided reference genes

Program Settings