Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 1.6e-161 572.8 300 100.0
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 6.1e-73 278.5 321 57.6
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 1.2e-63 247.7 321 51.7
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 5.7e-63 245.4 312 53.5
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 2.2e-62 243.4 313 51.8
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 1.7e-54 217.2 308 50.6
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 1.7e-54 217.2 327 50.2
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 6.4e-54 215.3 325 49.5
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 6.4e-54 215.3 328 48.8
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 3.2e-53 213.0 327 48.9
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 1.9e-50 203.8 313 49.8
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 2.8e-49 199.9 326 45.1
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 1.3e-46 191.0 306 44.1
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 2.2e-46 190.3 330 47.3
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 3.5e-44 183.0 325 46.2
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 7.8e-44 181.8 304 48.7
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.9e-43 179.5 326 40.2
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.9e-43 179.5 324 40.1
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.1e-42 177.9 324 40.4
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 5.6e-42 175.6 310 46.8
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 3.1e-40 169.9 321 43.3
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 8.9e-40 168.3 323 39.3
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 3.4e-39 166.4 320 41.6
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 9.8e-39 164.9 322 39.1
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.3e-38 164.5 322 38.8
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 2.2e-38 163.7 307 40.4
Nn1g01591 Nelumbo nucifera HOM05D006343 ORTHO05D005694 2.2e-38 163.7 318 40.9
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.9e-38 163.3 324 38.3
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 1.1e-37 161.4 308 41.2
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 1.9e-37 160.6 310 40.6
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 1.6e-36 157.5 254 43.7
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 3.5e-36 156.4 319 41.7
Haze_15537 Corylus avellana HOM05D006343 ORTHO05D005694 4.6e-36 156.0 303 44.2
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 6.0e-36 155.6 318 43.1
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 1.7e-35 154.1 317 41.0
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.3e-35 153.7 331 40.8
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 3.0e-35 153.3 316 44.0
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 3.9e-35 152.9 307 43.6
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 8.6e-35 151.8 333 40.5
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 1.9e-34 150.6 320 41.6
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 5.6e-34 149.1 272 39.7
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.3e-34 148.7 328 39.0
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 7.3e-34 148.7 310 43.5
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 9.5e-34 148.3 323 37.8
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 1.2e-33 147.9 311 37.6
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 2.1e-33 147.1 317 37.2
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 3.6e-33 146.4 314 41.7
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 6.2e-33 145.6 306 42.5
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 6.8e-32 142.1 314 36.3
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.5e-31 141.0 317 35.3
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 1.5e-31 141.0 318 43.7
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 2.0e-31 140.6 310 39.7
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 3.4e-31 139.8 334 35.3
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.4e-31 139.4 315 35.9
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 7.6e-31 138.7 339 38.6
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 1.3e-30 137.9 268 38.4
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.7e-30 137.5 369 36.9
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 5.4e-29 132.5 312 36.5
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 4.6e-28 129.4 327 38.2
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 2.3e-27 127.1 332 38.6
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 3.0e-27 126.7 318 38.1
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 3.0e-27 126.7 314 35.7
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 3.0e-27 126.7 313 33.9
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 3.9e-27 126.3 331 36.6
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 8.6e-27 125.2 311 40.8
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.9e-26 124.0 339 33.9
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 3.3e-26 123.2 314 40.4
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 1.2e-25 121.3 318 36.5
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 2.1e-25 120.6 308 32.5
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 2.1e-25 120.6 319 33.5
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 8.1e-25 118.6 329 32.5
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 2.6e-23 113.6 311 33.4
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 1.7e-22 110.9 321 34.0
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 3.8e-22 109.8 309 38.2
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 1.1e-21 108.2 306 33.0
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 1.4e-21 107.8 312 36.2
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 4.2e-21 106.3 348 35.1
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 7.1e-21 105.5 316 33.9
FAN01G2602 Fragaria x ananassa HOM05D006343 ORTHO05D005694 9.3e-21 105.1 195 42.6
DCAR_015699 Daucus carota HOM05D006343 ORTHO05D005694 1.2e-20 104.8 302 33.4
CAN.G650.25 Capsicum annuum HOM05D006343 ORTHO05D005694 2.7e-20 103.6 328 31.4
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 2.7e-20 103.6 348 31.6
CAN.G2424.1 Capsicum annuum HOM05D006343 ORTHO05D005694 4.6e-20 102.8 355 30.4
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 4.6e-20 102.8 314 37.3
Oeu035728.1 Olea europaea HOM05D006343 ORTHO05D005694 6.0e-20 102.4 292 35.3
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 1.0e-19 101.7 349 31.8
CAN.G650.35 Capsicum annuum HOM05D006343 ORTHO05D005694 1.3e-19 101.3 335 31.0
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 3.0e-19 100.1 346 30.3
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 8.7e-19 98.6 201 36.3
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 1.9e-18 97.4 343 31.5
CDE02G1832 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 2.5e-18 97.1 248 32.3
Aqoxy7G00256 Aquilegia oxysepala HOM05D006343 ORTHO05D005694 7.3e-18 95.5 335 30.7
Sopen02g019780 Solanum pennellii HOM05D006343 ORTHO05D005694 1.3e-17 94.7 339 31.6
CAN.G650.32 Capsicum annuum HOM05D006343 ORTHO05D005694 2.1e-17 94.0 345 30.1
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 4.8e-17 92.8 308 37.7
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 4.8e-17 92.8 304 32.9
FvH4_7g14880 Fragaria vesca HOM05D006343 ORTHO05D005694 6.2e-17 92.4 213 31.9
Carub.0006s3693 Capsella rubella HOM05D012121 ORTHO05D005694 8.1e-17 92.0 345 31.9
Gohir.A11G090700 Gossypium hirsutum HOM05D006343 ORTHO05D005694 2.4e-16 90.5 313 33.5
Potri.014G099800 Populus trichocarpa HOM05D006343 ORTHO05D005694 4.0e-16 89.7 254 33.1
FAN06G3127 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.3e-16 89.4 213 31.9
Solyc02g070700.3 Solanum lycopersicum HOM05D006343 ORTHO05D005694 2.0e-15 87.4 337 31.5
BcaC04g24184 Brassica carinata HOM05D012121 ORTHO05D005694 7.6e-15 85.5 351 29.6
BolC9t52962H Brassica oleracea HOM05D012121 ORTHO05D005694 7.6e-15 85.5 351 29.6
Migut.D00457 Erythranthe guttata HOM05D006343 ORTHO05D005694 9.9e-15 85.1 181 40.3
CAN.G650.28 Capsicum annuum HOM05D006343 ORTHO05D005694 1.3e-14 84.7 246 31.3
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 2.2e-14 84.0 343 29.7
CDE06G1281 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 4.9e-14 82.8 172 33.7
Medtr3g015950 Medicago truncatula HOM05D006343 ORTHO05D005694 6.4e-14 82.4 308 31.5
AT4G00310 Arabidopsis thaliana HOM05D012121 ORTHO05D005694 1.1e-13 81.6 340 30.6
C09p00270 Brassica napus HOM05D012121 ORTHO05D005694 1.4e-13 81.3 353 28.9
FAN10G3360 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.9e-13 80.9 310 28.1
FAN10G1634 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.4e-13 79.3 310 27.7
Gohir.D08G153300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 5.4e-13 79.3 311 33.1
ECA233G1044 Erigeron canadensis HOM05D006343 ORTHO05D005694 2.1e-12 77.4 330 29.7
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 2.1e-12 77.4 314 34.7
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 6.0e-12 75.9 342 29.2
THA.LOC104801575 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 1.0e-11 75.1 98 48.0
PSO478G0137 Papaver somniferum HOM05D020029 ORTHO05D005694 4.3e-10 69.7 335 29.9
PGSC0003DMG400008290 Solanum tuberosum HOM05D006343 ORTHO05D005694 4.3e-10 69.7 187 30.5
FAN03G2349 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.4e-10 68.9 75 53.3
PSO782G1271 Papaver somniferum HOM05D020029 ORTHO05D005694 1.6e-09 67.8 188 31.4
Sc01g0003550 Simmondsia chinensis HOM05D006343 ORTHO05D005694 1.6e-09 67.8 302 30.5
Actinidia10044 Actinidia chinensis HOM05D006343 ORTHO05D005694 2.8e-09 67.0 132 43.2
Zm00001eb222450 Zea mays HOM05D024295 ORTHO05D020951 3.6e-09 66.6 315 27.0
EL10Ac1g00388 Beta vulgaris HOM05D029301 ORTHO05D005694 6.2e-09 65.9 323 30.0
PSO478G4526 Papaver somniferum HOM05D020029 ORTHO05D005694 1.1e-08 65.1 210 33.3
A09p00590 Brassica napus HOM05D012121 ORTHO05D005694 1.8e-08 64.3 352 26.4
PSO782G1147 Papaver somniferum HOM05D020029 ORTHO05D005694 1.8e-08 64.3 115 40.9
BraA09t35701Z Brassica rapa HOM05D012121 ORTHO05D005694 6.9e-08 62.4 352 26.4
PSO782G0031 Papaver somniferum HOM05D020029 ORTHO05D005694 1.2e-07 61.6 213 30.0
Medtr8g028835 Medicago truncatula HOM05D006343 ORTHO05D005694 1.5e-07 61.2 76 51.3
HPP92_025480 Vanilla planifolia HOM05D049984 ORTHO05D020951 1.5e-07 61.2 188 30.3
Zm00001eb047010 Zea mays HOM05D024295 ORTHO05D020951 2.0e-07 60.8 331 26.9
Gorai.004G159200 Gossypium raimondii HOM05D006343 ORTHO05D005694 7.6e-07 58.9 314 27.1
Aa31LG5G640 Aethionema arabicum HOM05D012121 ORTHO05D005694 1.3e-06 58.2 47 61.7
FAN06G3406 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.9e-06 57.0 100 39.0
FAN03G0040 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.8e-06 56.6 118 32.2
TPR.G17916 Trifolium pratense HOM05D006343 ORTHO05D005694 4.9e-06 56.2 319 27.0


User provided reference genes

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