Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 5.0e-165 584.3 286 100.0
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.9e-124 449.5 282 78.7
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 8.0e-123 444.1 281 79.4
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 2.3e-122 442.6 284 75.7
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 1.7e-96 356.7 284 63.7
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 2.9e-96 355.9 284 65.1
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 2.9e-96 355.9 282 62.4
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 5.4e-95 351.7 283 64.0
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 1.3e-93 347.1 281 64.4
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 3.9e-93 345.5 284 63.4
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 5.1e-93 345.1 281 63.0
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 5.1e-93 345.1 284 62.0
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 9.6e-92 340.9 284 61.6
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 4.7e-91 338.6 284 61.3
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 4.7e-91 338.6 285 62.5
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 4.7e-91 338.6 284 61.3
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 6.2e-91 338.2 287 61.3
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.4e-90 337.0 284 61.6
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 3.8e-88 328.9 286 61.5
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 4.9e-88 328.6 280 59.6
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 3.2e-87 325.9 284 61.3
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 3.2e-87 325.9 286 61.2
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 7.1e-87 324.7 286 60.8
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 9.3e-87 324.3 280 59.3
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 1.2e-86 323.9 284 59.5
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.2e-86 323.9 287 58.2
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.6e-86 323.6 288 57.3
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 2.1e-86 323.2 283 59.7
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 2.7e-86 322.8 284 62.0
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 1.0e-85 320.9 284 60.9
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 1.3e-85 320.5 282 59.9
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 2.3e-85 319.7 281 59.4
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 2.3e-85 319.7 283 59.4
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 8.7e-85 317.8 285 58.6
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 1.5e-84 317.0 284 60.9
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 4.3e-84 315.5 284 58.8
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 5.6e-84 315.1 284 60.6
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 7.3e-84 314.7 282 58.2
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 7.3e-84 314.7 284 57.4
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 7.3e-84 314.7 284 57.4
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.3e-83 313.9 284 57.0
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.6e-83 313.5 284 57.0
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 2.1e-83 313.2 287 60.6
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 2.8e-83 312.8 285 60.0
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.8e-83 312.8 284 57.0
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.8e-83 312.8 285 56.5
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 3.6e-83 312.4 290 55.2
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 4.0e-82 308.9 280 56.4
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 6.9e-82 308.1 284 56.7
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 6.9e-82 308.1 289 55.7
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 1.2e-81 307.4 283 57.6
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.5e-81 307.0 304 54.6
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 1.3e-80 303.9 295 54.2
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 1.3e-80 303.9 284 57.4
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.7e-80 303.5 302 54.3
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 6.4e-80 301.6 281 58.4
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 1.9e-79 300.1 281 57.3
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 1.2e-78 297.4 281 57.7
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 3.5e-78 295.8 286 57.0
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 7.9e-78 294.7 299 55.5
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 5.1e-77 292.0 286 54.5
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 5.1e-77 292.0 285 56.1
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 6.6e-77 291.6 273 58.6
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 8.7e-77 291.2 284 54.9
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 1.1e-76 290.8 282 55.3
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.9e-76 290.0 273 58.6
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 9.0e-74 281.2 281 56.6
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 9.0e-74 281.2 284 54.2
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 2.2e-72 276.6 299 52.2
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 2.9e-72 276.2 285 53.7
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.4e-71 273.1 289 50.9
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 2.7e-70 269.6 284 51.4
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 5.1e-69 265.4 280 53.6
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.1e-68 264.2 282 51.8
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 1.5e-68 263.8 281 49.1
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 5.6e-68 261.9 282 52.1
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 2.8e-67 259.6 284 51.1
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 6.2e-67 258.5 282 50.0
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 3.1e-66 256.1 284 52.5
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.0e-66 255.8 283 50.5
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 5.3e-66 255.4 282 48.6
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 1.0e-64 251.1 285 49.5
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 1.0e-64 251.1 282 48.6
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.3e-64 250.8 284 48.9
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 2.9e-64 249.6 281 49.1
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.8e-64 249.2 287 52.6
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 4.9e-64 248.8 282 48.9
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.9e-63 246.9 280 49.3
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 4.2e-63 245.7 285 50.5
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.6e-62 243.8 286 52.1
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.6e-62 243.8 283 48.4
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 2.1e-62 243.4 283 52.7
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 2.7e-62 243.0 293 50.9
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 4.6e-62 242.3 283 47.3
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 6.0e-62 241.9 281 48.4
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 6.0e-62 241.9 283 47.7
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.0e-61 241.1 283 49.1
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 4.3e-60 235.7 314 46.5
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 1.3e-59 234.2 281 47.3
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.6e-59 233.8 283 47.3
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 2.8e-59 233.0 282 47.2
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 3.7e-59 232.6 282 47.2
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 6.9e-58 228.4 286 48.3
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.2e-57 227.6 308 41.9
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 1.5e-57 227.3 304 41.4
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 4.5e-57 225.7 242 50.8
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 2.9e-56 223.0 285 47.4
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.9e-56 223.0 287 47.7
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 3.8e-56 222.6 285 46.3
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 4.2e-55 219.2 265 44.2
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 1.2e-54 217.6 253 52.2
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 6.1e-54 215.3 225 50.7
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.5e-52 210.7 282 45.7
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 4.3e-52 209.1 285 42.5
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.6e-51 207.2 195 55.4
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 2.2e-51 206.8 289 43.6
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 1.4e-50 204.1 280 41.8
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.8e-50 203.8 284 45.8
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 5.3e-50 202.2 290 42.8
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 2.0e-49 200.3 273 43.6
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 8.5e-48 194.9 282 39.4
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 6.1e-46 188.7 285 39.6
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 7.9e-46 188.3 276 43.8
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.6e-44 183.3 288 44.4
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 5.7e-44 182.2 211 47.9
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 5.7e-44 182.2 280 40.4
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 2.2e-43 180.3 234 42.7
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 3.7e-43 179.5 281 41.3
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 6.3e-43 178.7 274 42.7
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 3.1e-42 176.4 284 41.9
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 9.1e-42 174.9 284 40.8
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 1.5e-41 174.1 281 39.5
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 4.5e-41 172.6 283 40.6
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 4.5e-41 172.6 285 39.6
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 7.7e-41 171.8 297 37.7
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.0e-40 171.4 273 42.9
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 2.2e-40 170.2 284 39.4
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 2.9e-40 169.9 287 40.8
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 3.2e-39 166.4 285 41.1
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 2.7e-38 163.3 282 41.1
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 3.6e-38 162.9 183 47.5
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 5.2e-37 159.1 274 39.4
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 5.2e-37 159.1 281 39.1
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 6.7e-37 158.7 282 39.7
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 6.7e-37 158.7 282 39.7
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 4.4e-36 156.0 274 40.5
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.7e-35 154.1 240 38.8
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 2.8e-35 153.3 281 35.9
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 1.5e-31 141.0 283 35.0
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 2.5e-31 140.2 287 38.3
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 2.5e-31 140.2 287 38.3
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 4.2e-31 139.4 276 38.4
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 4.2e-31 139.4 289 38.4
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 4.2e-31 139.4 276 38.4
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 4.7e-30 136.0 287 36.2
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 8.0e-30 135.2 288 37.5
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 1.0e-29 134.8 276 36.2
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 2.3e-29 133.7 276 35.5
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 2.6e-28 130.2 224 37.5
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.6e-28 130.2 293 33.8
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 9.7e-28 128.3 291 33.3
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 9.7e-28 128.3 274 32.8
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 1.3e-27 127.9 276 35.5
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.8e-24 116.3 284 31.3
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 2.5e-23 113.6 346 30.6
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 2.7e-22 110.2 276 32.2
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 3.0e-21 106.7 71 66.2
Lj7P510T18 Lonicera japonica HOM05D001925 ORTHO05D004257 3.5e-17 93.2 148 40.5
Lj6P578T28 Lonicera japonica HOM05D001925 ORTHO05D004257 4.5e-17 92.8 151 39.1
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 4.5e-17 92.8 278 29.1
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 2.5e-15 87.0 281 25.3
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 2.2e-11 73.9 277 23.8
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 8.3e-11 72.0 275 25.8
SEGI_37364 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 4.1e-10 69.7 221 27.6
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 4.1e-10 69.7 219 26.5
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 5.4e-10 69.3 60 51.7
Oeu051126.2 Olea europaea HOM05D001925 ORTHO05D004257 5.4e-10 69.3 141 35.5
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 4.5e-09 66.2 219 26.0
Lj6C572T1 Lonicera japonica HOM05D001925 ORTHO05D004257 1.3e-08 64.7 45 73.3
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.3e-08 64.7 269 24.9
MSTRG.12873 Avicennia marina HOM05D001925 ORTHO05D004257 2.3e-08 63.9 108 30.6
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.5e-07 61.2 59 45.8
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.3e-07 60.1 59 45.8
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 4.7e-06 56.2 57 45.6


User provided reference genes

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