Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 3.2e-69 265.0 138 100.0
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 2.7e-44 182.2 139 73.4
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 9.1e-40 167.2 122 71.3
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 1.2e-39 166.8 138 68.1
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 9.4e-37 157.1 122 68.9
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 1.2e-36 156.8 138 65.2
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 1.6e-36 156.4 138 64.5
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 6.3e-33 144.4 114 67.5
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 1.8e-32 142.9 139 59.0
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 1.0e-30 137.1 139 57.6
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.3e-30 136.7 138 58.0
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 6.6e-30 134.4 138 55.8
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 6.6e-30 134.4 139 56.8
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 2.5e-29 132.5 142 55.6
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 3.3e-29 132.1 135 56.3
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 3.3e-29 132.1 135 56.3
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 4.2e-29 131.7 132 55.3
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 1.2e-28 130.2 129 52.7
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 2.1e-28 129.4 136 57.4
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 3.6e-28 128.6 141 53.9
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 6.1e-28 127.9 114 62.3
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.0e-27 127.1 135 54.1
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.4e-27 126.7 122 59.0
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 1.8e-27 126.3 129 51.2
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 2.3e-27 125.9 137 55.5
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.3e-27 125.9 133 54.9
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 2.3e-27 125.9 136 52.2
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 3.0e-27 125.6 135 55.6
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 4.0e-27 125.2 122 57.4
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 5.2e-27 124.8 138 53.6
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 6.8e-27 124.4 135 54.1
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 1.2e-26 123.6 141 52.5
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.5e-26 123.2 133 54.1
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 3.4e-26 122.1 115 64.3
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 5.7e-26 121.3 137 53.3
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 9.8e-26 120.6 142 52.8
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.7e-25 119.8 146 52.1
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.9e-25 119.0 136 52.2
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 8.3e-25 117.5 135 51.9
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 4.1e-24 115.2 137 50.4
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 9.2e-24 114.0 140 50.7
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 9.2e-24 114.0 136 49.3
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.6e-23 113.2 142 50.0
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 4.6e-23 111.7 137 48.9
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 5.9e-23 111.3 138 52.2
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 7.8e-23 110.9 118 58.5
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 1.0e-22 110.5 138 48.6
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 1.3e-22 110.2 125 50.4
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 2.3e-22 109.4 136 52.2
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 2.9e-22 109.0 141 54.6
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 2.9e-22 109.0 135 50.4
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 6.6e-22 107.8 139 48.2
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.1e-21 107.1 137 45.3
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 2.5e-21 105.9 136 51.5
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.5e-21 105.9 136 49.3
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 3.3e-21 105.5 127 48.8
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 3.3e-21 105.5 79 70.9
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 5.6e-21 104.8 139 48.2
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 5.6e-21 104.8 138 44.2
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 5.6e-21 104.8 136 48.5
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 7.3e-21 104.4 134 46.3
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 9.5e-21 104.0 128 50.0
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 9.5e-21 104.0 138 51.4
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.6e-20 103.2 106 53.8
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.6e-20 103.2 132 47.7
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 2.1e-20 102.8 136 44.9
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 3.6e-20 102.1 117 53.0
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 3.1e-19 99.0 104 53.8
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 4.0e-19 98.6 139 43.9
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 5.2e-19 98.2 145 42.1
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 1.2e-18 97.1 133 45.9
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.2e-18 97.1 139 50.4
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 1.2e-18 97.1 137 50.4
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.6e-18 95.9 164 47.0
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.6e-18 95.9 141 51.1
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.6e-18 95.9 141 51.1
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 2.6e-18 95.9 134 44.0
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 3.4e-18 95.5 135 40.7
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 5.8e-18 94.7 87 55.2
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 5.8e-18 94.7 87 55.2
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 9.8e-18 94.0 140 40.7
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 1.3e-17 93.6 72 70.8
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 1.3e-17 93.6 140 42.9
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 1.3e-17 93.6 114 50.0
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.7e-17 93.2 136 44.9
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.9e-17 92.4 116 55.2
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 4.9e-17 91.7 87 55.2
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 6.4e-17 91.3 123 45.5
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 1.1e-16 90.5 130 46.2
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 1.1e-16 90.5 126 48.4
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.4e-16 90.1 106 52.8
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 1.9e-16 89.7 107 47.7
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 1.9e-16 89.7 97 52.6
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.4e-16 89.4 133 49.6
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 4.1e-16 88.6 96 51.0
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 4.1e-16 88.6 96 51.0
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 4.1e-16 88.6 123 42.3
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 5.4e-16 88.2 123 43.1
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 1.6e-15 86.7 133 39.1
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 2.0e-15 86.3 123 43.1
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 2.0e-15 86.3 106 48.1
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 6.0e-15 84.7 67 61.2
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 1.0e-14 84.0 161 37.3
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 1.7e-14 83.2 127 44.1
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 1.7e-14 83.2 127 44.1
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 1.7e-14 83.2 87 51.7
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 2.3e-14 82.8 149 42.3
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 3.0e-14 82.4 90 54.4
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 3.0e-14 82.4 90 54.4
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 3.9e-14 82.0 141 40.4
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 3.9e-14 82.0 127 46.5
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 5.0e-14 81.6 141 40.4
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 5.0e-14 81.6 133 38.3
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 1.9e-13 79.7 129 38.8
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 4.3e-13 78.6 142 39.4
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 5.6e-13 78.2 104 47.1
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 7.3e-13 77.8 123 39.8
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 1.2e-12 77.0 67 56.7
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 2.1e-12 76.3 91 52.7
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 2.8e-12 75.9 112 42.0
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.1e-11 73.9 124 36.3
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 2.3e-11 72.8 120 39.2
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 6.8e-11 71.2 87 50.6
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 6.8e-11 71.2 136 34.6
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 2.6e-10 69.3 136 39.0
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 3.4e-10 68.9 89 43.8
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 4.4e-10 68.6 102 43.1
Atru.chr5.498 Acer truncatum HOM05D000509 ORTHO05D006393 5.8e-10 68.2 45 73.3
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 7.5e-10 67.8 141 36.2
Aqoxy7G00306 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 1.7e-09 66.6 88 50.0
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 3.7e-09 65.5 115 37.4
AT4G07940 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 4.9e-09 65.1 127 40.2
Potri.006G202400 Populus trichocarpa HOM05D000509 ORTHO05D006393 2.4e-08 62.8 90 52.2
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 3.2e-08 62.4 112 38.4
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 1.2e-07 60.5 104 42.3
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 2.1e-07 59.7 71 46.5
PSO063G2671 Papaver somniferum HOM05D000509 ORTHO05D006393 1.3e-06 57.0 125 32.8
Sc09g0004100 Simmondsia chinensis HOM05D000509 ORTHO05D006393 2.3e-06 56.2 100 39.0
BcaC09g52246 Brassica carinata HOM05D000509 ORTHO05D006393 5.1e-06 55.1 70 54.3


User provided reference genes

Program Settings