Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 7.4e-212 740.3 392 100.0
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.0e-169 599.4 386 80.3
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 2.8e-166 589.0 386 77.7
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.2e-164 583.6 388 77.8
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 3.1e-157 558.9 353 79.3
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.0e-157 558.5 353 79.3
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 2.9e-155 552.4 353 77.3
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.9e-155 552.4 359 76.3
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 8.3e-155 550.8 358 77.9
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 4.6e-153 545.0 352 76.7
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 7.8e-153 544.3 389 72.2
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 1.7e-152 543.1 359 75.8
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 3.0e-152 542.3 352 77.8
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 5.1e-152 541.6 359 74.9
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.5e-151 540.0 359 74.1
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.5e-151 539.3 352 76.1
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 7.3e-151 537.7 352 76.7
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 3.6e-150 535.4 351 77.5
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 3.6e-150 535.4 348 75.3
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 6.2e-150 534.6 353 76.2
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 2.3e-149 532.7 394 71.6
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 3.1e-149 532.3 391 70.6
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 5.2e-149 531.6 386 72.3
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 6.8e-149 531.2 353 76.2
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 1.2e-148 530.4 388 71.6
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.7e-147 526.6 393 73.0
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 3.7e-147 525.4 351 71.8
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 3.7e-147 525.4 351 71.8
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 4.9e-147 525.0 392 70.9
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.9e-147 525.0 381 71.1
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-146 523.9 351 71.8
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.9e-146 523.1 351 71.5
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 2.4e-146 522.7 358 72.9
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.2e-146 522.3 384 70.6
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.2e-146 522.3 388 68.8
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 4.1e-146 521.9 388 71.9
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 4.1e-146 521.9 348 71.8
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.4e-146 521.5 381 70.3
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 5.4e-146 521.5 360 71.4
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 7.1e-146 521.2 351 71.2
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 9.2e-146 520.8 347 72.6
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 9.2e-146 520.8 351 71.5
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 9.2e-146 520.8 381 70.6
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.2e-145 520.4 355 73.5
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.6e-145 520.0 333 77.5
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.1e-145 519.6 348 71.6
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.7e-145 519.2 348 71.8
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 2.7e-145 519.2 359 72.7
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 3.5e-145 518.8 351 70.4
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 3.5e-145 518.8 360 70.6
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 3.5e-145 518.8 360 73.1
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 4.6e-145 518.5 359 73.0
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 6.0e-145 518.1 359 71.9
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.0e-145 518.1 381 70.1
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 6.0e-145 518.1 388 69.8
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 7.8e-145 517.7 360 72.5
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.3e-144 516.9 360 71.7
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-144 516.5 381 70.3
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 3.0e-144 515.8 351 70.7
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 3.0e-144 515.8 351 70.7
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.0e-144 515.8 352 74.1
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 3.0e-144 515.8 352 74.7
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 5.1e-144 515.0 351 74.6
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 8.6e-144 514.2 351 69.8
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.9e-143 513.1 379 69.1
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 2.5e-143 512.7 360 72.2
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 4.3e-143 511.9 348 73.3
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 7.3e-143 511.1 362 71.0
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.6e-142 510.0 353 72.2
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.6e-142 510.0 353 72.2
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 4.7e-142 508.4 360 71.4
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 4.7e-142 508.4 354 72.0
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 6.2e-142 508.1 353 72.0
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 8.9e-141 504.2 354 70.9
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.2e-140 503.8 359 71.6
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.2e-139 499.6 352 68.8
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 4.9e-139 498.4 354 71.5
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 6.4e-139 498.0 352 68.8
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-138 497.3 351 70.1
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-138 497.3 348 69.3
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 4.2e-138 495.4 375 67.7
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 5.4e-138 495.0 354 70.3
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 9.3e-138 494.2 351 68.9
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.2e-137 493.8 375 67.7
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.1e-137 493.0 353 70.8
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 3.5e-137 492.3 351 69.2
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 4.6e-137 491.9 353 70.5
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 6.0e-137 491.5 350 70.0
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 7.8e-137 491.1 332 74.4
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.0e-136 490.7 351 68.7
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 5.1e-136 488.4 347 71.5
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 5.1e-136 488.4 422 61.4
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 6.6e-136 488.0 355 68.7
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 7.3e-135 484.6 382 64.9
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 9.6e-135 484.2 357 67.8
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.3e-134 483.8 355 67.3
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.3e-134 483.8 333 73.3
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 2.1e-134 483.0 353 68.8
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 4.8e-134 481.9 359 68.0
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 6.2e-134 481.5 357 67.8
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 1.1e-133 480.7 353 68.0
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.4e-133 480.3 352 66.8
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.4e-133 480.3 353 68.3
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.8e-133 479.9 354 68.6
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 2.6e-132 476.1 334 71.9
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 4.5e-132 475.3 353 67.7
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 2.5e-127 459.5 343 67.1
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 4.3e-127 458.8 333 70.9
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 5.8e-124 448.4 296 77.0
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.4e-122 443.7 298 72.1
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 9.6e-119 431.0 362 62.7
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.8e-117 426.8 305 69.2
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 6.9e-117 424.9 356 61.0
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.2e-113 414.1 370 59.7
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.5e-111 406.4 349 59.3
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.4e-108 396.0 293 69.6
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-105 386.7 344 56.7
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.6e-105 385.6 326 60.7
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.4e-103 378.3 341 56.0
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 7.7e-100 368.2 358 54.7
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.3e-99 367.5 379 55.1
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.5e-98 363.2 340 52.6
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 7.4e-95 351.7 369 54.2
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 9.1e-93 344.7 317 54.3
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 3.8e-91 339.3 224 74.6
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.7e-87 325.5 237 66.7
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 3.8e-75 286.2 333 50.5
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.2e-74 282.0 320 44.4
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.1e-73 278.9 312 45.8
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.5e-71 274.2 313 45.7
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.0e-67 261.5 293 46.1
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.1e-66 258.1 198 69.7
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-64 250.8 311 41.8
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 5.7e-63 245.7 264 53.4
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 9.8e-63 245.0 300 41.7
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-62 243.8 319 40.8
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-62 243.8 286 43.7
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-61 240.7 322 39.1
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.4e-61 240.4 174 69.0
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.2e-61 238.4 286 43.7
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.7e-60 236.9 291 43.0
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 7.8e-60 235.3 179 64.2
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 9.5e-58 228.4 150 78.0
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.4e-55 219.9 268 41.0
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 7.0e-53 212.2 152 69.7
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.6e-49 201.1 310 37.4
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.1e-48 198.4 153 58.2
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.0e-44 182.6 328 34.1
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 6.6e-43 179.1 148 61.5
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.9e-42 177.6 337 34.1
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.3e-42 176.8 143 68.5
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.5e-42 175.3 339 33.3
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.2e-41 174.9 159 59.1
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.1e-41 172.2 343 31.8
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 2.3e-40 170.6 221 43.9
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.3e-40 170.6 326 29.8
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.2e-40 169.5 345 33.6
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.1e-33 145.6 315 28.9
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.4e-31 140.2 311 31.2
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-30 137.9 316 29.1
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 2.2e-30 137.5 118 57.6
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 3.0e-27 127.1 77 79.2
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.5e-26 124.0 294 29.3
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.3e-26 123.6 128 44.5
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.8e-25 120.6 315 30.5
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 8.1e-25 119.0 81 75.3
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 9.0e-24 115.5 76 72.4
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.4e-23 113.2 312 29.8
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.9e-23 112.1 189 36.5
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 2.2e-22 110.9 327 26.6
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.1e-20 104.4 324 28.1
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.5e-20 103.6 223 28.7
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.8e-16 91.3 339 26.5
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.4e-16 90.9 309 27.5
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 2.0e-15 87.8 300 25.7
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 2.1e-09 67.8 62 58.1
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.8e-09 67.4 147 32.7
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.1e-08 63.9 92 42.4


User provided reference genes

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