Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 5.0e-109 397.9 218 100.0
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 5.2e-74 281.6 219 73.1
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 5.8e-73 278.1 223 71.7
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 1.5e-52 210.3 183 59.6
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 2.8e-51 206.1 215 52.1
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 1.1e-44 184.1 232 52.2
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 2.5e-44 183.0 217 50.2
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 1.8e-42 176.8 218 47.2
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 6.9e-42 174.9 223 46.2
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.2e-41 174.1 218 47.7
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.5e-41 173.7 179 52.0
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 2.6e-41 172.9 213 50.7
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 6.5e-40 168.3 213 52.1
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.9e-39 166.8 175 52.0
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 4.2e-39 165.6 182 51.1
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 1.6e-38 163.7 207 51.2
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 2.1e-38 163.3 178 53.9
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 2.1e-38 163.3 217 46.5
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.6e-38 162.2 220 45.0
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 2.3e-37 159.8 217 48.4
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 2.3e-37 159.8 223 47.5
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.0e-37 159.5 225 49.3
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 6.7e-37 158.3 217 45.6
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 6.7e-37 158.3 224 47.8
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 1.1e-36 157.5 174 49.4
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.1e-36 157.5 180 50.0
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 1.1e-36 157.5 211 43.6
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 2.5e-36 156.4 178 52.8
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.5e-36 156.4 178 48.3
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 2.5e-36 156.4 177 49.7
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 4.3e-36 155.6 180 49.4
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 4.3e-36 155.6 217 45.6
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 4.3e-36 155.6 177 47.5
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 7.4e-36 154.8 215 47.9
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 8.2e-35 151.4 179 48.0
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.8e-34 150.2 177 46.3
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 1.2e-33 147.5 211 50.2
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.5e-33 147.1 175 50.3
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 2.0e-33 146.7 176 48.9
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 2.6e-33 146.4 179 43.6
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 3.4e-33 146.0 177 45.2
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 3.4e-33 146.0 176 48.9
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 5.9e-33 145.2 217 42.9
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 7.7e-33 144.8 179 47.5
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.7e-32 143.7 175 46.9
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.4e-31 140.6 178 46.1
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 1.9e-31 140.2 181 46.4
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 2.5e-31 139.8 211 40.8
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 2.5e-31 139.8 176 46.0
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 4.2e-31 139.0 173 45.1
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 5.5e-31 138.7 211 40.8
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 7.2e-31 138.3 228 41.2
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-30 137.5 211 40.8
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.2e-30 137.5 175 46.3
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.1e-30 136.7 178 42.7
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 2.1e-30 136.7 179 44.1
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.6e-30 136.0 211 40.8
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.6e-30 135.6 211 40.3
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 4.6e-30 135.6 217 41.5
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 1.0e-29 134.4 178 43.8
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 1.4e-29 134.0 182 44.5
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 6.7e-29 131.7 211 39.8
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 8.8e-29 131.3 208 44.7
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 1.1e-28 131.0 178 39.3
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.6e-28 129.8 211 39.3
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 2.2e-27 126.7 182 42.3
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 2.2e-27 126.7 215 42.3
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 2.2e-27 126.7 211 40.3
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 3.7e-27 125.9 178 42.1
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 4.8e-27 125.6 211 39.8
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 1.8e-26 123.6 179 43.6
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.8e-26 123.6 204 41.2
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 2.4e-26 123.2 184 40.8
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 5.3e-26 122.1 176 42.0
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 5.3e-26 122.1 174 42.5
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 9.1e-26 121.3 176 42.0
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 1.2e-25 120.9 178 42.1
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 1.2e-25 120.9 210 38.1
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 1.2e-25 120.9 181 38.7
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 1.2e-25 120.9 177 42.4
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 1.5e-25 120.6 188 40.4
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 2.6e-25 119.8 167 42.5
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 2.6e-25 119.8 168 41.1
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 2.6e-25 119.8 210 37.6
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 3.4e-25 119.4 174 42.0
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 4.5e-25 119.0 173 39.9
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 1.0e-24 117.9 164 42.7
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.0e-24 117.9 169 42.0
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 1.7e-24 117.1 181 38.7
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 2.2e-24 116.7 178 38.2
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 2.2e-24 116.7 178 38.2
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 2.9e-24 116.3 179 37.4
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 6.5e-24 115.2 178 37.6
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 8.5e-24 114.8 209 37.8
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 3.2e-23 112.8 168 40.5
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 4.2e-23 112.5 178 37.6
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 5.5e-23 112.1 182 38.5
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.2e-22 110.9 181 38.1
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.2e-22 110.9 208 38.5
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 1.2e-22 110.9 211 33.6
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.6e-22 110.5 205 35.1
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 3.9e-21 105.9 155 43.9
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 5.2e-21 105.5 218 34.9
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 5.2e-21 105.5 176 36.9
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.2e-21 105.5 182 37.4
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 6.7e-21 105.1 174 35.6
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.8e-21 104.8 177 39.5
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 2.0e-20 103.6 218 34.4
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 2.2e-19 100.1 216 35.2
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.8e-19 99.8 158 38.6
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 3.1e-18 96.3 225 33.8
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-17 94.4 129 45.0
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.6e-17 94.0 217 33.2
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 2.0e-17 93.6 172 36.6
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 2.0e-17 93.6 173 31.8
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.1e-15 87.8 115 45.2
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-15 87.0 147 37.4
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.5e-15 86.7 130 43.1
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 2.5e-15 86.7 235 31.1
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.2e-15 86.3 109 45.9
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 7.2e-15 85.1 191 33.0
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 7.2e-15 85.1 171 31.0
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.2e-14 84.3 171 31.0
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 2.1e-14 83.6 111 44.1
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 6.1e-14 82.0 159 36.5
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.8e-13 80.5 202 29.2
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 1.8e-13 80.5 157 34.4
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 1.7e-11 73.9 126 37.3
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 2.2e-11 73.6 52 59.6
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.7e-11 72.8 126 36.5
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 5.3e-10 68.9 152 36.8
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 2.7e-09 66.6 134 35.1
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-08 63.9 176 27.8
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-08 63.9 176 27.8
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 2.2e-08 63.5 52 55.8
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 1.5e-07 60.8 129 31.8
Mapoly0101s0052 Marchantia polymorpha HOM05D019105 ORTHO05D018335 1.5e-07 60.8 80 40.0
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 2.5e-07 60.1 125 37.6
CDE08G1175 Ceratophyllum demersum HOM05D005367 ORTHO05D006328 2.1e-06 57.0 130 31.5
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 8.0e-06 55.1 126 31.0


User provided reference genes

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