Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.3e-140 503.1 247 100.0
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.8e-126 456.1 246 90.7
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 6.3e-124 447.6 250 88.0
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 1.7e-121 439.5 250 86.4
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.2e-121 439.1 250 85.6
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 2.9e-121 438.7 245 87.3
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 3.8e-121 438.3 246 87.0
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 5.0e-121 438.0 247 86.6
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 5.0e-121 438.0 247 86.6
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 8.5e-121 437.2 246 87.0
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 1.9e-120 436.0 250 86.0
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 4.2e-120 434.9 247 85.8
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.5e-120 434.5 248 85.9
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 5.5e-120 434.5 246 87.0
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 7.2e-120 434.1 247 85.8
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 7.2e-120 434.1 250 85.6
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 9.4e-120 433.7 246 86.2
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.2e-119 433.3 250 83.2
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 1.2e-119 433.3 246 86.6
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 1.6e-119 433.0 249 84.7
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.1e-119 432.6 250 85.6
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 2.7e-119 432.2 247 85.4
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 3.6e-119 431.8 250 84.8
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.6e-119 431.8 250 83.6
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 4.6e-119 431.4 248 86.7
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 6.1e-119 431.0 246 85.8
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 7.9e-119 430.6 250 83.6
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 1.0e-118 430.3 248 85.1
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 1.8e-118 429.5 246 85.0
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 3.0e-118 428.7 245 85.7
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 3.0e-118 428.7 248 83.9
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 5.1e-118 427.9 246 85.0
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 6.7e-118 427.6 246 85.4
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 6.7e-118 427.6 247 84.6
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 8.8e-118 427.2 246 85.0
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 1.5e-117 426.4 246 83.7
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 2.0e-117 426.0 250 82.4
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 2.0e-117 426.0 246 85.0
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 2.5e-117 425.6 248 83.9
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 7.4e-117 424.1 246 85.0
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 7.4e-117 424.1 246 85.4
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 7.4e-117 424.1 247 84.2
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 9.7e-117 423.7 246 85.0
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 1.7e-116 422.9 248 83.5
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 1.7e-116 422.9 246 84.6
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 2.8e-116 422.2 248 83.1
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 2.8e-116 422.2 246 83.7
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 4.8e-116 421.4 246 82.5
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 4.8e-116 421.4 246 84.6
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 6.3e-116 421.0 248 83.1
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 6.3e-116 421.0 246 84.6
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 8.2e-116 420.6 246 82.9
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 8.2e-116 420.6 245 82.4
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 1.1e-115 420.2 247 83.8
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.4e-115 419.9 247 81.8
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.4e-115 419.9 247 81.8
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 1.4e-115 419.9 249 81.5
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 1.8e-115 419.5 247 81.4
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 2.4e-115 419.1 286 74.8
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 4.1e-115 418.3 248 80.6
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 5.3e-115 417.9 283 76.0
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 5.3e-115 417.9 246 82.9
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 6.9e-115 417.5 248 80.6
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 6.9e-115 417.5 246 83.7
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 9.1e-115 417.2 246 83.7
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 1.2e-114 416.8 245 82.4
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 1.2e-114 416.8 248 80.6
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 1.2e-114 416.8 246 83.7
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.2e-114 416.8 246 83.3
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.5e-114 416.4 245 82.0
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.5e-114 416.4 246 83.7
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.4e-114 415.2 246 83.3
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 7.7e-114 414.1 241 83.4
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 1.3e-113 413.3 246 82.9
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 2.2e-113 412.5 247 80.6
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 3.8e-113 411.8 247 83.0
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 5.0e-113 411.4 247 81.0
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 5.0e-113 411.4 286 74.1
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 8.5e-113 410.6 230 86.5
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 8.5e-113 410.6 247 80.6
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.1e-112 410.2 248 80.6
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.4e-112 409.8 246 80.5
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 1.9e-112 409.5 247 80.2
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 3.2e-112 408.7 246 80.9
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 4.2e-112 408.3 247 80.2
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 4.2e-112 408.3 247 80.2
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 9.4e-112 407.1 247 79.4
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 1.2e-111 406.8 246 80.5
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 1.2e-111 406.8 247 79.8
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 1.6e-111 406.4 249 79.5
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 2.1e-111 406.0 248 80.6
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.1e-111 406.0 248 81.0
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 3.6e-111 405.2 247 79.8
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 4.7e-111 404.8 247 79.4
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 4.7e-111 404.8 247 79.4
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 4.7e-111 404.8 247 79.4
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 4.7e-111 404.8 247 78.9
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 7.9e-111 404.1 247 79.4
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 7.9e-111 404.1 247 79.4
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 1.0e-110 403.7 241 82.6
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 1.0e-110 403.7 247 79.4
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.0e-110 403.7 248 79.8
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.4e-110 403.3 248 80.6
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 1.8e-110 402.9 232 83.6
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.8e-110 402.9 247 78.9
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 1.8e-110 402.9 247 81.0
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 2.3e-110 402.5 247 78.5
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 3.0e-110 402.1 248 79.4
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 3.9e-110 401.7 247 78.9
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 5.1e-110 401.4 247 78.5
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 5.7e-109 397.9 247 76.5
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 4.8e-108 394.8 246 80.1
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 1.4e-107 393.3 230 84.8
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 5.3e-107 391.3 246 76.0
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 5.3e-107 391.3 247 75.7
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 1.2e-106 390.2 246 76.4
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 1.2e-106 390.2 247 75.3
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.2e-106 390.2 244 78.3
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 2.6e-106 389.0 248 77.4
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 3.5e-106 388.7 224 84.4
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 3.5e-106 388.7 247 75.3
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.8e-105 385.2 220 85.9
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.5e-104 382.5 252 78.6
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 5.5e-104 381.3 213 85.4
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 1.2e-103 380.2 245 76.7
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 1.2e-103 380.2 241 76.3
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 1.0e-102 377.1 227 80.6
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 1.5e-101 373.2 245 73.5
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 2.0e-101 372.9 222 81.1
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 2.0e-101 372.9 226 79.6
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 9.7e-101 370.5 248 76.2
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 1.7e-100 369.8 230 78.3
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 4.8e-100 368.2 213 81.7
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 1.8e-99 366.3 269 69.1
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 2.6e-98 362.5 246 72.4
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 3.5e-98 362.1 239 73.6
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 4.5e-98 361.7 230 79.1
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 8.8e-94 347.4 243 70.0
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 1.2e-93 347.1 243 70.0
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 4.8e-92 341.7 349 53.6
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 9.1e-91 337.4 203 80.3
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 4.5e-90 335.1 214 74.3
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.3e-89 333.6 301 61.8
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 3.8e-89 332.0 200 81.0
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 3.2e-88 328.9 189 82.0
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 9.4e-88 327.4 241 66.8
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.6e-87 326.6 212 79.2
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 1.0e-86 323.9 245 63.7
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 1.7e-84 316.6 184 82.6
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 3.5e-82 308.9 231 67.5
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 1.0e-81 307.4 183 84.2
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 2.8e-79 299.3 235 61.3
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 1.8e-75 286.6 153 88.2
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 2.0e-74 283.1 237 65.4
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 2.8e-71 272.7 154 84.4
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 9.8e-69 264.2 249 52.2
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 5.4e-67 258.5 162 77.8
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 1.0e-65 254.2 153 80.4
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.0e-65 252.7 151 82.1
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.6e-64 248.4 134 88.1
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 2.3e-62 243.0 152 75.7
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 1.2e-61 240.7 251 54.6
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 7.5e-61 238.0 224 58.0
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.2e-59 232.6 156 74.4
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 4.0e-54 215.7 121 81.0
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 3.9e-49 199.1 113 87.6
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 1.5e-40 170.6 96 85.4
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 4.4e-37 159.1 90 86.7
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 5.8e-37 158.7 90 82.2
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 3.2e-35 152.9 89 84.3
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 8.7e-33 144.8 86 81.4
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 7.6e-29 131.7 70 84.3
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.7e-28 130.6 70 81.4
TPR.G18261 Trifolium pratense HOM05D003698 ORTHO05D004320 2.8e-23 113.2 92 64.1
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 9.0e-22 108.2 65 75.4
CAN.G134.80 Capsicum annuum HOM05D003698 ORTHO05D004320 4.5e-21 105.9 61 88.5
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 1.9e-19 100.5 82 65.9
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 3.3e-16 89.7 45 86.7
Haze_05812 Corylus avellana HOM05D003698 ORTHO05D004320 5.7e-16 89.0 57 77.2
CSS0029944 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.1e-14 84.7 85 55.3
TAR636G2570 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.1e-11 74.7 69 62.3
PGR044G1122 Punica granatum HOM05D003698 ORTHO05D004320 2.5e-11 73.6 113 43.4
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 7.9e-10 68.6 29 96.6
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.3e-09 67.8 33 84.8
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 3.0e-09 66.6 114 36.8
Haze_02709 Corylus avellana HOM05D050389 ORTHO05D165297 1.5e-08 64.3 38 81.6
Solyc08g076560.1 Solanum lycopersicum HOM05D003698 ORTHO05D391923 2.5e-08 63.5 40 72.5


User provided reference genes

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