Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 1.2e-109 399.8 203 100.0
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 1.0e-84 317.0 204 80.9
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 2.7e-80 302.4 228 72.4
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 1.6e-77 293.1 202 72.3
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 1.9e-70 269.6 189 68.8
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 3.3e-70 268.9 204 66.7
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 2.1e-69 266.2 204 66.7
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 1.8e-68 263.1 194 67.0
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 2.3e-68 262.7 184 68.5
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 3.1e-68 262.3 187 72.2
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 4.0e-68 261.9 186 72.6
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 3.4e-67 258.8 206 66.5
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 4.4e-67 258.5 201 66.2
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 4.4e-67 258.5 187 70.1
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 5.8e-67 258.1 200 64.5
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 9.9e-67 257.3 188 68.6
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 2.2e-66 256.1 205 65.4
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 8.4e-66 254.2 188 67.0
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 1.1e-65 253.8 195 63.6
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 2.4e-65 252.7 177 70.6
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 4.1e-65 251.9 203 66.5
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 4.1e-65 251.9 205 63.9
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 5.4e-65 251.5 204 63.2
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 7.1e-65 251.1 204 63.2
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 1.6e-64 250.0 204 63.7
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 2.1e-64 249.6 200 62.5
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 2.1e-64 249.6 181 68.5
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 4.6e-64 248.4 181 68.0
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 6.0e-64 248.1 195 64.6
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 6.0e-64 248.1 173 70.5
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 7.8e-64 247.7 210 61.0
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.0e-63 247.3 204 62.3
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 1.0e-63 247.3 200 64.0
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 1.7e-63 246.5 164 70.7
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 1.7e-63 246.5 187 66.8
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 2.3e-63 246.1 187 66.8
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 3.0e-63 245.7 187 66.3
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 8.6e-63 244.2 231 58.0
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 1.5e-62 243.4 171 70.8
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 1.5e-62 243.4 182 67.6
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 1.5e-62 243.4 200 60.5
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 1.9e-62 243.0 176 65.3
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 2.5e-62 242.7 204 62.3
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 1.6e-61 240.0 204 60.8
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 2.1e-61 239.6 177 65.0
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 2.8e-61 239.2 201 61.2
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 6.2e-61 238.0 199 62.8
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 2.4e-60 236.1 182 64.8
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 3.1e-60 235.7 182 65.4
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 3.1e-60 235.7 170 68.2
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 3.1e-60 235.7 189 61.9
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 5.2e-60 235.0 170 68.8
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 6.8e-60 234.6 194 61.9
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 7.6e-59 231.1 187 64.2
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 9.9e-59 230.7 204 59.8
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 9.9e-59 230.7 198 61.6
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 2.9e-58 229.2 201 58.7
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 2.4e-57 226.1 190 59.5
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 4.2e-57 225.3 172 64.0
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 5.4e-57 224.9 177 63.3
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 7.1e-57 224.6 196 58.7
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 1.2e-56 223.8 176 60.8
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 4.6e-56 221.9 194 59.8
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 4.6e-56 221.9 176 60.2
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 3.0e-55 219.2 176 60.2
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 3.9e-55 218.8 180 61.1
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 6.6e-55 218.0 200 56.0
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 1.5e-54 216.9 202 56.4
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 1.9e-54 216.5 184 58.2
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 2.5e-54 216.1 174 61.5
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 9.6e-54 214.2 193 58.0
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.1e-53 213.0 176 59.7
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 2.4e-52 209.5 180 58.3
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 1.2e-51 207.2 187 55.6
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 1.5e-51 206.8 174 58.6
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 2.6e-51 206.1 168 60.7
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 5.8e-51 204.9 208 55.8
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 1.1e-49 200.7 184 55.4
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 1.6e-48 196.8 154 61.0
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 7.9e-48 194.5 187 54.0
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 3.9e-47 192.2 175 56.0
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 5.1e-47 191.8 195 54.9
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.9e-46 189.9 175 54.3
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 3.3e-46 189.1 201 49.8
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 4.3e-46 188.7 166 59.6
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 4.8e-45 185.3 172 55.8
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 5.3e-44 181.8 172 55.2
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 7.6e-43 177.9 175 53.7
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 9.9e-43 177.6 188 50.0
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 9.9e-43 177.6 175 51.4
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 9.9e-43 177.6 175 51.4
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 1.3e-42 177.2 175 52.0
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 8.4e-42 174.5 216 44.4
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 2.4e-41 172.9 176 51.1
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 5.5e-41 171.8 176 50.6
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 7.9e-40 167.9 175 50.3
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.8e-39 166.8 166 54.2
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 1.9e-38 163.3 192 50.5
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 1.9e-38 163.3 128 67.2
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 2.5e-38 162.9 178 51.7
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 3.3e-38 162.5 192 50.0
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 3.3e-38 162.5 192 50.0
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 1.6e-37 160.2 178 51.1
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 2.8e-37 159.5 192 49.5
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 1.8e-36 156.8 202 44.1
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 4.0e-36 155.6 185 44.9
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 4.5e-35 152.1 112 69.6
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 4.5e-35 152.1 111 68.5
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 2.5e-30 136.3 101 66.3
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 1.1e-28 131.0 203 43.3
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 9.7e-22 107.8 99 57.6
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 1.8e-20 103.6 189 40.2
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 7.7e-19 98.2 190 33.2
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 5.0e-18 95.5 174 33.3
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 8.2e-13 78.2 118 37.3
SMO337G0092 Selaginella moellendorffii HOM05D006799 ORTHO05D008391 2.3e-07 60.1 180 25.6
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 4.4e-06 55.8 41 58.5


User provided reference genes

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