Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 0.0e+00 1156.0 594 100.0
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.0e-297 1026.2 594 88.7
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 3.0e-297 1024.6 593 87.5
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.5e-296 1021.5 593 87.4
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 2.8e-295 1018.1 594 87.5
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.7e-292 1008.8 586 87.7
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.3e-284 982.6 595 83.4
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.7e-284 982.2 595 83.2
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 9.3e-283 976.5 595 83.9
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 4.6e-282 974.2 596 84.1
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 7.9e-282 973.4 595 83.9
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 6.7e-281 970.3 598 84.1
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 3.3e-280 968.0 595 82.7
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 1.3e-279 966.1 596 83.2
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 8.2e-279 963.4 595 81.8
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 8.2e-279 963.4 595 82.4
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 4.5e-277 957.6 598 82.1
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 6.5e-276 953.7 595 82.5
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 6.5e-276 953.7 598 81.6
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 2.5e-275 951.8 595 83.2
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 7.2e-275 950.3 595 81.5
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.9e-272 942.2 594 80.3
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 2.5e-272 941.8 595 80.8
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 4.3e-272 941.0 600 81.0
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 9.7e-272 939.9 596 81.4
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.4e-270 935.3 598 79.4
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 4.1e-270 934.5 596 81.0
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 9.0e-270 933.3 608 78.8
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.2e-268 928.7 597 79.6
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 2.2e-268 928.7 600 80.2
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.9e-268 928.3 597 79.1
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.4e-267 926.0 595 78.7
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.4e-267 926.0 598 80.3
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 2.1e-266 922.2 589 80.0
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 6.1e-266 920.6 608 78.5
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.0e-265 919.8 595 79.5
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.0e-265 919.8 595 79.5
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.9e-265 917.9 602 77.7
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.1e-265 917.5 602 77.6
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 6.7e-265 917.1 602 77.6
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.7e-265 917.1 600 79.2
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 8.8e-265 916.8 607 75.9
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.8e-265 916.8 600 79.2
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.0e-264 915.6 596 79.0
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 2.0e-264 915.6 598 78.8
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.3e-264 914.8 600 77.5
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 4.3e-264 914.4 600 79.5
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 7.4e-264 913.7 607 75.6
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 9.7e-264 913.3 595 78.5
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.2e-263 912.1 602 78.6
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 8.2e-263 910.2 600 79.2
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 5.3e-262 907.5 595 78.2
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 1.1e-259 899.8 595 76.8
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.9e-259 899.0 595 76.8
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 7.2e-259 897.1 595 76.8
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 6.1e-258 894.0 597 75.5
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 6.1e-258 894.0 595 76.5
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.0e-257 893.3 610 77.0
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 3.9e-257 891.3 595 76.3
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 8.8e-257 890.2 611 76.1
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 3.3e-256 888.3 596 75.8
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 2.8e-255 885.2 595 76.0
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 4.8e-255 884.4 607 74.8
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 4.8e-255 884.4 595 75.8
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.2e-253 879.8 601 75.0
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 2.9e-252 875.2 597 75.0
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.5e-251 872.8 596 74.8
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.5e-251 872.8 596 74.8
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 2.5e-251 872.1 597 76.2
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 4.2e-251 871.3 602 75.1
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 2.1e-250 869.0 601 74.2
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 3.6e-250 868.2 600 74.8
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 6.1e-250 867.5 593 74.9
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.3e-249 865.5 601 74.5
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.3e-249 865.5 587 75.1
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 3.0e-249 865.1 598 75.1
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 6.7e-249 864.0 605 73.9
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.1e-248 863.2 594 74.4
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 1.1e-248 863.2 595 74.1
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 7.5e-248 860.5 595 74.8
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 9.7e-248 860.1 598 74.1
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 1.7e-247 859.4 593 74.0
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.7e-247 858.2 604 74.3
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 4.8e-247 857.8 596 74.3
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 4.8e-247 857.8 596 74.3
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 4.8e-247 857.8 596 74.3
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 4.8e-247 857.8 598 73.9
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 2.4e-246 855.5 597 73.7
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 4.1e-246 854.7 595 73.3
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.2e-245 853.2 606 73.6
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.3e-244 849.7 615 71.9
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.2e-244 849.0 596 72.5
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 2.9e-244 848.6 595 71.8
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 5.0e-244 847.8 609 71.4
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.1e-243 846.7 594 73.4
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.5e-243 846.3 593 74.0
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 2.5e-243 845.5 595 73.9
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 7.2e-243 844.0 601 73.4
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 6.1e-242 840.9 597 72.2
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 7.5e-240 833.9 597 73.5
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 2.2e-239 832.4 597 70.5
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 3.5e-237 825.1 604 70.4
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.5e-237 824.7 594 71.4
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 4.9e-231 804.7 601 68.9
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 2.4e-230 802.4 596 72.0
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 9.2e-230 800.4 606 70.5
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.3e-228 796.6 549 73.2
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 5.0e-228 794.7 548 74.8
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 8.6e-228 793.9 644 65.5
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 9.5e-227 790.4 609 68.6
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.6e-226 788.5 599 70.8
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 4.0e-225 785.0 609 68.1
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.4e-224 781.9 601 69.6
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 4.9e-223 778.1 594 69.0
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 2.4e-222 775.8 870 52.1
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 1.6e-221 773.1 615 64.6
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.7e-213 745.7 594 66.7
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 3.5e-213 745.3 596 64.4
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 7.8e-205 717.6 567 68.8
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.5e-195 686.0 476 74.2
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-180 637.5 597 60.8
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.5e-176 623.6 492 67.7
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.1e-170 601.3 519 64.2
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 2.5e-158 563.1 599 50.6
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 6.1e-157 558.5 604 51.2
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.6e-149 533.9 598 49.7
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.1e-142 511.1 600 51.5
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 2.5e-134 483.4 614 44.3
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.0e-128 463.8 588 45.9
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.4e-89 334.7 243 68.3
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.4e-89 334.7 209 78.5
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.7e-82 311.2 329 52.0
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 3.8e-74 283.5 625 33.4
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.4e-73 281.6 234 64.5
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.6e-64 251.5 211 64.9
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 9.9e-59 232.3 594 29.8
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 5.3e-52 209.9 147 73.5
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.6e-48 198.4 151 66.9
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 8.5e-34 149.4 201 43.8
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 2.1e-32 144.8 98 71.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 3.6e-32 144.1 623 23.4
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.1e-25 122.5 79 73.4
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 1.4e-25 122.1 79 72.2
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 1.2e-24 119.0 79 70.9
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 2.0e-22 111.7 210 44.3
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.0e-18 99.4 114 44.7
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.7e-13 82.0 59 71.2
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 3.1e-12 77.8 95 47.4
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 3.1e-12 77.8 93 48.4


User provided reference genes

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