Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 2086.6 1047 100.0
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1682.9 1041 81.6
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1617.4 1079 76.9
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1576.2 1023 75.3
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1571.2 1043 72.3
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1566.2 1049 73.1
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1565.1 1060 74.0
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1564.3 1048 73.2
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1561.6 1047 73.0
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1559.7 1044 71.9
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1551.2 1051 71.6
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1547.3 1047 72.0
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1535.4 1048 73.0
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1526.9 1043 71.0
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1513.8 1053 70.1
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1511.1 1047 70.8
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1508.8 1051 69.8
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1501.1 1047 69.6
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1493.0 1047 69.9
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1491.9 1047 69.8
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1488.8 1047 71.1
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1484.5 1046 69.6
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1479.9 1044 69.7
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1472.2 1040 70.0
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1469.1 1046 68.9
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1463.4 1043 68.9
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1463.4 1048 68.8
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1463.0 1048 68.7
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1459.1 1043 69.5
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1458.4 1066 69.3
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1458.0 1050 68.2
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1458.0 1047 68.8
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1458.0 1048 70.0
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1456.4 1048 70.1
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1453.0 1049 68.5
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1451.8 1054 68.1
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1449.5 1044 69.7
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1446.4 1055 69.4
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1444.1 1048 67.8
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1441.4 1048 67.8
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1437.2 1050 67.8
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1429.8 1046 67.7
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1428.3 1160 62.4
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1427.5 1061 67.4
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1418.7 1061 66.1
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1416.0 1059 66.9
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1403.7 1043 66.1
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1401.7 1062 66.9
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1401.3 1043 65.5
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1401.0 1043 65.6
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1395.2 1044 64.9
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1390.2 1047 66.7
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1389.0 1043 65.2
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1383.6 1045 65.1
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1383.6 1048 66.1
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1383.2 1043 64.9
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1383.2 1095 64.4
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1379.4 1043 65.2
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1378.2 1043 65.1
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1372.5 1061 64.6
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1367.8 1076 65.3
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1367.4 1046 64.2
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1359.4 1061 64.1
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1355.5 1050 64.3
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1354.7 1091 62.8
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1354.3 1014 66.3
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1338.6 1082 62.8
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1327.4 1083 61.7
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1327.0 1055 62.7
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1326.2 1050 62.0
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1318.1 1047 62.2
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1318.1 1131 59.2
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1317.4 1098 60.2
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1301.6 1033 63.8
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1300.0 1047 60.3
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1285.8 1049 60.2
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1282.7 1042 61.2
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1258.8 1046 60.0
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1252.7 1044 59.9
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1250.3 1044 59.8
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1240.7 1029 59.4
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1238.8 1168 56.4
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1234.9 855 70.9
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1199.9 1061 58.2
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1199.5 1045 58.5
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1195.6 1051 58.8
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1194.5 1049 57.1
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1172.1 1137 54.8
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1137.9 1050 54.8
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1136.7 1033 56.2
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 0.0e+00 1091.6 885 66.4
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 3.2e-310 1068.5 870 60.5
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.3e-308 1063.1 1046 53.3
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 2.8e-290 1002.3 913 57.6
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 7.9e-285 984.2 1017 48.8
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 8.4e-279 964.1 682 69.6
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 3.3e-259 899.0 1061 46.8
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 3.5e-232 809.3 1063 41.9
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 2.8e-226 789.6 734 55.7
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 8.6e-223 778.1 704 56.4
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 2.5e-214 750.0 721 54.5
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 8.0e-213 745.0 570 66.3
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 4.0e-212 742.7 510 70.4
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.4e-201 706.8 702 49.9
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 2.7e-200 703.4 818 48.0
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 1.9e-193 680.6 494 71.1
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 1.2e-192 677.9 660 50.9
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 1.1e-188 664.8 502 62.9
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 8.1e-181 638.6 596 56.0
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.4e-180 637.9 1065 36.6
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 9.0e-180 635.2 835 41.2
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 5.8e-179 632.5 439 73.3
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 5.8e-179 632.5 1051 39.5
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 4.0e-172 609.8 857 39.0
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.9e-166 590.9 500 58.0
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 3.2e-161 573.5 380 74.7
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.4e-134 483.4 352 68.2
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 1.5e-129 468.4 341 68.3
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 8.0e-120 436.0 445 49.7
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.2e-115 422.2 863 34.0
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 2.9e-106 391.0 345 58.6
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 4.9e-93 347.1 1137 27.6
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.1e-87 329.3 246 67.5
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 1.4e-76 292.4 236 61.9
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-73 282.7 422 42.2
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 3.6e-72 277.7 281 54.1
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 6.4e-69 266.9 226 58.8
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 6.4e-69 266.9 285 51.6
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 1.9e-68 265.4 497 36.6
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 9.3e-68 263.1 178 74.2
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 2.1e-64 251.9 206 58.3
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.4e-63 249.2 1123 25.9
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.3e-61 242.7 363 42.7
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 4.2e-60 237.7 166 66.9
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 1.9e-57 228.8 1165 24.3
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 3.4e-54 218.0 327 42.2
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 1.7e-53 215.7 227 51.5
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 3.2e-52 211.5 126 84.1
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 2.5e-36 158.7 332 32.2
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.0e-34 153.3 96 78.1
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.7e-32 146.0 109 67.9
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.7e-32 144.8 187 43.3
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.1e-31 143.3 115 65.2
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 5.9e-30 137.5 164 42.1
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 5.0e-29 134.4 88 76.1
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 8.5e-29 133.7 96 71.9
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 1.2e-27 129.8 166 47.6
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 9.7e-25 120.2 82 64.6
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.4e-23 116.3 155 46.5
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 7.2e-20 104.0 88 51.1
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 9.7e-17 93.6 69 60.9
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 1.3e-16 93.2 70 64.3
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.3e-16 93.2 120 45.8
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 2.9e-13 82.0 105 41.9
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.3e-08 66.6 46 73.9
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 1.8e-07 62.8 77 45.5
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 1.2e-06 60.1 77 50.6


User provided reference genes

Program Settings