Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G017200 Carya illinoinensis HOM05D006100 ORTHO05D007539 4.5e-46 187.6 95 100.0
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 1.3e-29 132.9 95 74.7
CiPaw.01G037400 Carya illinoinensis HOM05D006100 ORTHO05D007539 6.1e-27 124.0 95 73.7
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 2.3e-26 122.1 94 69.1
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 5.2e-26 120.9 83 77.1
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 9.7e-25 116.7 101 64.4
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 2.2e-24 115.5 78 76.9
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 2.2e-24 115.5 93 66.7
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 4.8e-24 114.4 78 75.6
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 8.2e-24 113.6 89 68.5
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 2.4e-23 112.1 87 72.4
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 4.1e-23 111.3 89 70.8
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 4.1e-23 111.3 94 64.9
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 5.3e-23 110.9 92 68.5
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 5.3e-23 110.9 87 70.1
FvH4_1g13390 Fragaria vesca HOM05D006100 ORTHO05D007539 7.0e-23 110.5 91 69.2
FAN19G3207 Fragaria x ananassa HOM05D006100 ORTHO05D007539 7.0e-23 110.5 91 69.2
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 9.1e-23 110.2 93 64.5
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 1.2e-22 109.8 94 66.0
MD02G1148600 Malus domestica HOM05D006100 ORTHO05D007539 1.6e-22 109.4 92 65.2
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 2.0e-22 109.0 93 67.7
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 2.7e-22 108.6 80 70.0
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 2.7e-22 108.6 86 67.4
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 3.5e-22 108.2 72 75.0
RcHm_v2.0_Chr2g0101751 Rosa chinensis HOM05D006100 ORTHO05D007539 3.5e-22 108.2 92 66.3
FAN28G1903 Fragaria x ananassa HOM05D006100 ORTHO05D007539 4.5e-22 107.8 94 63.8
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 5.9e-22 107.5 78 69.2
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 7.7e-22 107.1 78 70.5
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 7.7e-22 107.1 78 70.5
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 7.7e-22 107.1 96 65.6
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 1.0e-21 106.7 78 70.5
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 1.0e-21 106.7 84 65.5
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 1.3e-21 106.3 90 63.3
arahy.Tifrunner.gnm1.ann1.L1JEHI Arachis hypogaea HOM05D006100 ORTHO05D007539 1.3e-21 106.3 95 65.3
MD15G1262800 Malus domestica HOM05D006100 ORTHO05D007539 1.3e-21 106.3 74 73.0
Medtr5g020060 Medicago truncatula HOM05D006100 ORTHO05D007539 1.3e-21 106.3 72 76.4
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 3.8e-21 104.8 86 62.8
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 5.0e-21 104.4 95 65.3
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 5.0e-21 104.4 93 64.5
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 1.1e-20 103.2 78 69.2
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 1.1e-20 103.2 78 69.2
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 1.1e-20 103.2 96 61.5
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 2.5e-20 102.1 69 75.4
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 2.5e-20 102.1 87 65.5
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 3.2e-20 101.7 97 62.9
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 5.5e-20 100.9 73 69.9
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 7.2e-20 100.5 93 60.2
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 7.2e-20 100.5 93 60.2
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 9.4e-20 100.1 77 66.2
PSO675G2321 Papaver somniferum HOM05D006100 ORTHO05D007539 9.4e-20 100.1 96 61.5
Aa31LG1G15340 Aethionema arabicum HOM05D006100 ORTHO05D007539 1.2e-19 99.8 74 73.0
PSO541G1538 Papaver somniferum HOM05D006100 ORTHO05D007539 1.2e-19 99.8 78 69.2
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 1.6e-19 99.4 92 63.0
FAN23G0264 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.1e-19 99.0 92 64.1
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 2.1e-19 99.0 77 64.9
FAN26G0501 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.7e-19 98.6 83 61.4
Gohir.A11G184500 Gossypium hirsutum HOM05D006100 ORTHO05D007539 3.6e-19 98.2 95 58.9
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 4.7e-19 97.8 92 57.6
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 4.7e-19 97.8 72 68.1
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 4.7e-19 97.8 78 65.4
PGR119G0418 Punica granatum HOM05D006100 ORTHO05D007539 4.7e-19 97.8 90 64.4
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 6.1e-19 97.4 93 59.1
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 8.0e-19 97.1 76 67.1
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 1.0e-18 96.7 84 63.1
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 1.8e-18 95.9 79 64.6
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 1.8e-18 95.9 79 64.6
PGR102G3048 Punica granatum HOM05D006100 ORTHO05D007539 1.8e-18 95.9 90 61.1
Glyma.11G067900 Glycine max HOM05D006100 ORTHO05D007539 2.3e-18 95.5 84 64.3
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 4.0e-18 94.7 66 71.2
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 4.0e-18 94.7 66 71.2
Cpa.g.sc6.110 Carica papaya HOM05D006100 ORTHO05D007539 1.5e-17 92.8 90 62.2
FAN26G1330 Fragaria x ananassa HOM05D006100 ORTHO05D007539 3.4e-17 91.7 63 74.6
FAN28G0382 Fragaria x ananassa HOM05D006100 ORTHO05D007539 5.7e-17 90.9 68 69.1
vmacro17841 Vaccinium macrocarpon HOM05D006100 ORTHO05D007539 5.7e-17 90.9 81 60.5
Eucgr.I02450 Eucalyptus grandis HOM05D006100 ORTHO05D007539 2.2e-16 89.0 86 59.3
Gohir.D10G093000 Gossypium hirsutum HOM05D006100 ORTHO05D007539 3.7e-16 88.2 93 58.1
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 8.3e-16 87.0 94 53.2
Os03g0723400 Oryza sativa ssp. japonica HOM05D006100 ORTHO05D007539 1.1e-15 86.7 70 62.9
ClCG01G019510 Citrullus lanatus HOM05D006100 ORTHO05D007539 1.4e-15 86.3 89 53.9
MD02G1148700 Malus domestica HOM05D006100 ORTHO05D007539 4.1e-15 84.7 95 53.7
CANSAT01G1084 Cannabis sativa HOM05D006100 ORTHO05D007539 1.2e-14 83.2 71 66.2
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 2.7e-14 82.0 92 53.3
TAR376G0804 Trochodendron aralioides HOM05D001794 ORTHO05D004177 3.5e-14 81.6 69 59.4
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 5.9e-14 80.9 83 57.8
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 1.3e-13 79.7 92 53.3
Prupe.7G153800 Prunus persica HOM05D006100 ORTHO05D007539 5.0e-13 77.8 69 62.3
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.1e-12 76.6 68 60.3
Manes.01G135000 Manihot esculenta HOM05D006100 ORTHO05D007539 1.5e-12 76.3 70 64.3
GSVIVG01018974001 Vitis vinifera HOM05D006100 ORTHO05D007539 1.9e-12 75.9 90 53.3
TPR.G34229 Trifolium pratense HOM05D006100 ORTHO05D007539 3.2e-12 75.1 68 57.4
Nitab4.5_0001385g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 4.2e-12 74.7 88 56.8
Nitab4.5_0000434g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 5.5e-12 74.3 88 56.8
CsaV3_6G046200 Cucumis sativus L. HOM05D006100 ORTHO05D007539 7.2e-12 73.9 85 51.8
Glyma.16G140500 Glycine max HOM05D006100 ORTHO05D007539 2.1e-11 72.4 73 58.9
Peaxi162Scf00515g00519 Petunia axillaris HOM05D006100 ORTHO05D007539 3.6e-11 71.6 60 65.0
Migut.H00995 Erythranthe guttata HOM05D006100 ORTHO05D007539 4.7e-11 71.2 96 49.0
AUR62004046 Chenopodium quinoa HOM05D006100 ORTHO05D007539 1.0e-10 70.1 83 45.8
Peaxi162Scf00008g03716 Petunia axillaris HOM05D006100 ORTHO05D007539 1.0e-10 70.1 65 58.5
EL10Ac6g15568 Beta vulgaris HOM05D006100 ORTHO05D007539 1.8e-10 69.3 86 52.3
AUR62007561 Chenopodium quinoa HOM05D006100 ORTHO05D007539 3.0e-10 68.6 83 47.0
MBI16_g38642_MAGBIO Magnolia biondii HOM05D006100 ORTHO05D007539 4.0e-10 68.2 87 48.3
Solyc02g062770.2 Solanum lycopersicum HOM05D006100 ORTHO05D007539 5.2e-10 67.8 88 44.3
PGSC0003DMG400015478 Solanum tuberosum HOM05D006100 ORTHO05D007539 5.2e-10 67.8 76 51.3
SGA_v2.0_scaffold276G46633 Striga asiatica HOM05D006100 ORTHO05D007539 6.8e-10 67.4 71 56.3
Sopen02g013800 Solanum pennellii HOM05D006100 ORTHO05D007539 1.5e-09 66.2 88 45.5
CAN.G358.97 Capsicum annuum HOM05D006100 ORTHO05D007539 2.0e-09 65.9 84 50.0
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 2.0e-09 65.9 84 53.6
Solyc02g085330.1 Solanum lycopersicum HOM05D006100 ORTHO05D007539 2.6e-09 65.5 73 54.8
Sopen02g030020 Solanum pennellii HOM05D006100 ORTHO05D007539 2.6e-09 65.5 73 54.8
Gorai.011G102200 Gossypium raimondii HOM05D006100 ORTHO05D007539 5.7e-09 64.3 51 66.7
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 9.8e-09 63.5 69 50.7
HanXRQChr16g0530351 Helianthus annuus HOM05D006100 ORTHO05D007539 1.3e-08 63.2 82 46.3
unitig_899.g14492 Utricularia gibba HOM05D006100 ORTHO05D007539 1.3e-08 63.2 76 50.0
Lj4g0020328 Lotus japonicus HOM05D006100 ORTHO05D007539 1.7e-08 62.8 79 49.4
DCAR_025920 Daucus carota HOM05D006100 ORTHO05D007539 2.2e-08 62.4 69 52.2
CDE01G0731 Ceratophyllum demersum HOM05D006100 ORTHO05D007539 3.7e-08 61.6 83 48.2
Oeu033643.1 Olea europaea HOM05D006100 ORTHO05D007539 8.3e-08 60.5 58 58.6
Nitab4.5_0000136g0440 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.4e-07 59.7 98 41.8


User provided reference genes

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