Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 0.0e+00 1220.3 626 100.0
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 7.2e-185 651.4 687 56.8
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.1e-161 574.3 705 49.5
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 2.5e-161 573.2 711 50.9
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 4.3e-161 572.4 698 49.0
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 2.8e-160 569.7 702 47.9
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 4.0e-159 565.8 718 49.7
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 8.3e-157 558.1 713 47.0
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.6e-155 553.9 708 47.9
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 1.2e-152 544.3 717 45.6
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.8e-151 540.4 727 46.8
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 8.9e-151 538.1 726 46.3
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 9.9e-150 534.6 722 47.1
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 2.9e-149 533.1 722 47.1
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 6.0e-147 525.4 717 46.6
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 3.0e-146 523.1 700 45.4
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 6.6e-146 521.9 700 45.3
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.9e-145 520.4 719 46.7
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 1.2e-144 517.7 709 45.8
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.6e-144 517.3 697 45.8
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 4.7e-144 515.8 723 45.0
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 6.9e-143 511.9 702 45.4
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 4.4e-142 509.2 720 45.0
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 2.1e-139 500.4 698 46.0
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.5e-137 494.2 707 46.0
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 2.1e-136 490.3 726 44.5
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 2.2e-133 480.3 723 41.9
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 6.4e-133 478.8 697 44.3
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.2e-132 476.1 628 46.8
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.4e-132 475.7 712 43.5
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 2.1e-131 473.8 716 42.9
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 1.3e-130 471.1 707 43.7
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 2.3e-130 470.3 739 42.2
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 6.7e-130 468.8 713 43.5
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 6.7e-130 468.8 707 42.6
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.5e-129 467.6 736 43.5
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.9e-129 467.2 731 42.7
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.5e-129 466.8 698 43.7
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 7.4e-129 465.3 698 39.7
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 7.4e-129 465.3 709 41.9
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.3e-128 464.5 735 43.0
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-127 461.5 853 40.6
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 4.0e-127 459.5 697 41.6
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 7.6e-126 455.3 700 40.7
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.7e-125 454.1 736 40.4
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.2e-123 448.0 708 41.0
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.6e-123 447.6 635 42.4
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 3.9e-122 443.0 707 40.7
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 1.5e-121 441.0 707 41.2
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 2.1e-120 437.2 489 53.8
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 6.2e-120 435.6 574 47.4
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.1e-119 434.9 695 41.9
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.8e-119 434.1 713 41.1
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.5e-118 431.0 644 42.5
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.3e-117 427.9 708 40.0
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 2.2e-117 427.2 713 39.1
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 4.9e-117 426.0 705 39.3
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 2.5e-116 423.7 673 39.2
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 5.5e-116 422.5 702 38.0
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 7.1e-116 422.2 713 38.8
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.2e-115 421.4 718 40.0
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.6e-115 419.5 712 39.9
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 5.1e-114 416.0 719 39.1
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 8.7e-114 415.2 719 39.1
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.9e-113 414.1 718 39.3
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 2.1e-112 410.6 716 38.8
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 4.8e-112 409.5 722 38.6
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.1e-111 408.3 714 38.8
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.8e-111 407.5 694 41.4
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 1.4e-108 397.9 579 43.7
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 1.9e-108 397.5 704 40.3
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 4.2e-108 396.4 705 40.0
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 2.1e-107 394.0 598 41.5
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.1e-107 394.0 533 44.8
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.3e-106 391.3 656 39.6
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.8e-106 391.0 693 38.5
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.3e-105 386.3 772 36.0
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 5.7e-105 386.0 679 38.3
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 4.8e-104 382.9 698 38.5
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.4e-103 381.3 710 38.7
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.0e-102 377.5 638 38.4
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 2.6e-102 377.1 510 47.1
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 2.2e-101 374.0 598 40.3
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.9e-100 370.9 697 38.5
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 4.2e-100 369.8 709 36.8
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 7.9e-99 365.5 506 43.7
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.0e-98 365.2 647 39.3
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 1.0e-98 365.2 712 36.7
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 2.3e-98 364.0 730 38.5
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 7.4e-97 359.0 715 36.4
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 6.9e-95 352.4 550 41.5
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 2.2e-93 347.4 707 36.6
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.1e-92 345.1 464 44.6
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 5.5e-92 342.8 705 36.7
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.6e-91 341.3 524 40.5
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.8e-90 337.8 636 37.7
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 5.2e-90 336.3 632 39.2
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.7e-88 330.1 639 38.2
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 4.1e-87 326.6 498 40.4
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 7.0e-87 325.9 639 38.3
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.6e-86 323.9 677 36.6
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.6e-81 307.4 482 41.7
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.8e-79 301.2 659 33.8
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.4e-79 300.8 487 41.1
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.5e-76 291.6 675 35.1
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 8.0e-75 285.8 559 37.4
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 2.3e-74 284.3 611 34.0
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 3.5e-70 270.4 758 32.6
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.9e-68 264.6 754 30.2
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.2e-67 261.9 481 37.4
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.0e-66 258.8 250 61.2
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 4.9e-64 250.0 730 30.4
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.6e-62 245.0 639 30.5
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 9.5e-60 235.7 476 37.8
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 9.5e-60 235.7 355 40.6
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.3e-58 231.1 447 36.7
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.0e-57 228.0 669 29.3
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 8.3e-56 222.6 672 29.2
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 8.3e-56 222.6 672 29.2
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 2.0e-54 218.0 267 53.2
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.6e-53 213.0 419 36.0
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 3.6e-51 207.2 564 31.2
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.0e-49 201.4 378 36.0
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 4.4e-49 200.3 226 47.3
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.7e-48 198.4 649 29.6
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.0e-45 189.1 394 33.2
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.9e-44 184.9 234 48.3
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 4.3e-44 183.7 230 45.7
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.6e-41 174.5 274 43.8
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 2.4e-39 167.9 327 36.7
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.4e-39 167.9 342 35.4
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.1e-38 164.9 260 38.8
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.9e-37 160.6 468 31.4
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.2e-31 139.4 141 49.6
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.3e-29 135.6 341 32.8
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 3.0e-29 134.4 415 30.4
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.9e-23 115.2 210 35.2
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 4.2e-23 114.0 140 44.3
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 6.6e-21 106.7 81 70.4
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 8.7e-21 106.3 80 62.5
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 9.6e-20 102.8 106 50.9
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.1e-19 101.7 104 51.0
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 3.6e-19 100.9 241 34.4
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.8e-18 98.6 198 35.9
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 9.0e-18 96.3 129 45.7
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 2.0e-17 95.1 169 39.1
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 1.7e-16 92.0 589 24.4
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 2.2e-16 91.7 90 51.1
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 3.8e-16 90.9 347 30.0
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.4e-16 89.7 225 31.1
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 8.4e-16 89.7 184 36.4
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 7.1e-15 86.7 183 36.1
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.6e-14 85.5 136 39.0
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.3e-13 82.4 81 56.8
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.1e-13 80.5 216 31.9
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 4.8e-11 73.9 48 60.4
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 2.4e-10 71.6 259 32.0
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 7.6e-09 66.6 143 32.2
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 6.4e-08 63.5 60 51.7
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 9.3e-07 59.7 80 43.8


User provided reference genes

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