Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.5e-104 382.1 189 100.0
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 4.1e-83 311.6 221 72.4
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.2e-82 310.1 221 73.3
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 3.5e-82 308.5 221 71.9
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 5.9e-82 307.8 221 72.4
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 7.7e-82 307.4 221 71.5
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.3e-81 306.6 221 72.4
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.3e-81 306.6 221 71.5
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 2.9e-81 305.4 221 71.5
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 2.9e-81 305.4 221 71.5
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 6.6e-81 304.3 221 69.7
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 6.6e-81 304.3 221 69.7
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 6.6e-81 304.3 221 71.9
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 8.6e-81 303.9 221 69.2
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 8.6e-81 303.9 221 71.5
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 8.6e-81 303.9 221 71.5
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.5e-80 303.1 221 70.1
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 2.5e-80 302.4 221 69.7
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 2.5e-80 302.4 221 72.4
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.3e-80 302.0 221 69.2
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 5.5e-80 301.2 221 71.9
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 7.2e-80 300.8 221 70.1
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 9.5e-80 300.4 221 71.9
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 1.6e-79 299.7 221 71.5
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.6e-79 298.5 222 68.9
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 6.1e-79 297.7 221 70.6
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 6.1e-79 297.7 221 71.5
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 8.0e-79 297.4 222 70.7
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.3e-78 295.8 221 71.0
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 2.3e-78 295.8 221 70.1
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 4.0e-78 295.0 221 68.8
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 6.8e-78 294.3 221 68.8
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 2.0e-77 292.7 221 68.3
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 3.4e-77 292.0 222 67.6
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 4.4e-77 291.6 222 67.6
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 4.4e-77 291.6 221 69.2
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 4.4e-77 291.6 208 71.6
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 7.5e-77 290.8 239 66.1
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 9.8e-77 290.4 222 67.1
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 1.3e-76 290.0 221 67.4
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 2.2e-76 289.3 221 68.8
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 6.3e-76 287.7 221 69.2
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 8.3e-76 287.3 221 68.8
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.4e-75 286.6 221 68.8
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 1.8e-75 286.2 221 67.4
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 1.8e-75 286.2 221 67.0
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 2.4e-75 285.8 221 67.0
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 2.4e-75 285.8 221 68.8
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 5.4e-75 284.6 221 65.6
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 7.0e-75 284.3 221 68.3
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.6e-74 283.1 221 68.8
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 3.5e-74 282.0 221 66.5
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 5.9e-74 281.2 221 66.1
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 2.3e-73 279.3 221 66.1
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 6.6e-73 277.7 221 67.4
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.9e-72 276.2 222 66.7
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 4.3e-72 275.0 222 66.2
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.6e-72 274.6 221 64.3
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 7.3e-72 274.2 221 67.0
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 4.7e-71 271.6 221 65.6
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 4.7e-71 271.6 222 64.0
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 4.7e-71 271.6 221 66.5
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 4.7e-71 271.6 223 65.9
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 8.0e-71 270.8 230 63.9
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 8.0e-71 270.8 221 65.2
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 8.0e-71 270.8 221 66.1
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 8.0e-71 270.8 221 66.1
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.0e-70 270.4 200 70.0
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 1.4e-70 270.0 221 65.6
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.8e-70 269.6 221 65.2
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 5.2e-70 268.1 197 69.5
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 8.9e-70 267.3 221 64.3
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.2e-69 266.9 221 65.6
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 4.9e-68 261.5 221 63.3
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 8.3e-68 260.8 320 49.1
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 1.1e-67 260.4 222 63.5
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.4e-67 260.0 195 68.7
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 3.2e-67 258.8 234 61.5
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 9.2e-67 257.3 199 68.3
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.6e-66 256.5 195 69.2
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.0e-66 256.1 195 68.7
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.7e-66 255.8 165 79.4
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.7e-65 253.1 301 49.8
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 5.0e-65 251.5 213 63.8
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 1.1e-64 250.4 222 61.3
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 1.5e-64 250.0 222 61.7
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 5.6e-64 248.1 222 60.8
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 7.3e-64 247.7 222 62.6
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 9.5e-64 247.3 222 62.6
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 9.5e-64 247.3 195 66.2
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.2e-63 246.9 199 64.8
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 1.6e-63 246.5 223 61.4
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 1.6e-63 246.5 223 61.4
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.6e-63 246.5 195 66.2
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.1e-63 246.1 222 61.7
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.1e-63 246.1 222 61.7
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.4e-62 243.4 195 66.7
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.8e-62 243.0 212 62.7
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.8e-62 243.0 223 60.1
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.3e-62 242.7 223 60.5
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.3e-62 242.7 223 60.5
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 6.8e-62 241.1 195 65.1
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.5e-61 240.0 196 63.8
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 3.4e-61 238.8 221 58.4
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 1.3e-60 236.9 222 60.4
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.3e-60 236.9 195 64.6
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 3.2e-59 232.3 290 48.3
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 6.6e-57 224.6 183 63.4
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 2.5e-56 222.6 211 59.7
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 3.3e-56 222.2 221 54.8
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.3e-56 221.9 206 60.2
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 9.5e-56 220.7 137 79.6
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 4.7e-55 218.4 198 61.1
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 6.2e-55 218.0 221 52.0
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 6.2e-55 218.0 215 55.3
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 1.1e-54 217.2 137 78.1
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 6.8e-54 214.5 215 54.9
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 5.8e-53 211.5 194 57.7
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 9.9e-53 210.7 221 54.3
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 2.9e-52 209.1 179 63.1
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.4e-51 206.8 170 65.9
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.0e-49 200.7 173 60.7
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 2.3e-49 199.5 225 53.3
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 2.3e-49 199.5 225 53.3
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 1.9e-48 196.4 221 52.9
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 7.3e-48 194.5 220 53.2
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 2.4e-46 189.5 222 47.7
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.1e-43 180.6 197 52.8
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.9e-43 179.9 223 46.6
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.1e-42 176.4 222 44.1
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 7.8e-42 174.5 195 51.8
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 9.6e-40 167.5 170 54.7
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 2.6e-37 159.5 179 50.8
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 5.8e-37 158.3 100 76.0
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 4.9e-36 155.2 131 61.8
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.6e-34 150.2 204 43.6
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 1.3e-31 140.6 204 39.7
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.2e-26 124.0 222 32.9
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 2.1e-23 113.2 82 72.0
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 2.4e-22 109.8 127 48.0
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 2.6e-21 106.3 63 81.0
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.2e-20 103.2 98 58.2
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.4e-19 100.5 247 30.4
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.3e-17 94.0 190 35.3
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.8e-15 85.5 63 74.6
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 4.8e-15 85.5 100 48.0
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.7e-10 69.7 110 38.2
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 6.3e-07 58.5 93 38.7


User provided reference genes

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