Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G010900 Carya illinoinensis HOM05D008738 ORTHO05D010755 9.8e-121 436.8 220 100.0
CiPaw.02G011200 Carya illinoinensis HOM05D008738 ORTHO05D010755 4.3e-108 394.8 220 90.5
Haze_15456 Corylus avellana HOM05D008738 ORTHO05D010755 2.7e-38 162.9 223 45.3
Haze_15455 Corylus avellana HOM05D008738 ORTHO05D010755 9.8e-36 154.5 218 45.0
Cfa003965 Carpinus fangiana HOM05D008738 ORTHO05D010755 4.1e-34 149.1 217 43.8
MD02G1163800 Malus domestica HOM05D008738 ORTHO05D010755 7.8e-17 91.7 198 33.3
Haze_15451 Corylus avellana HOM05D000529 ORTHO05D000472 1.7e-16 90.5 135 35.6
Prupe.7G140100 Prunus persica HOM05D008738 ORTHO05D010755 2.3e-16 90.1 197 33.0
Cfa021022 Carpinus fangiana HOM05D000529 ORTHO05D010311 3.9e-16 89.4 135 36.3
QL06p042829 Quercus lobata HOM05D000529 ORTHO05D000472 1.6e-14 84.0 127 38.6
Cfa003970 Carpinus fangiana HOM05D000529 ORTHO05D000472 1.0e-13 81.3 126 33.3
QL06p042786 Quercus lobata HOM05D000529 ORTHO05D000472 2.3e-13 80.1 119 39.5
QL06p042817 Quercus lobata HOM05D000529 ORTHO05D000472 2.3e-13 80.1 119 39.5
QL06p042852 Quercus lobata HOM05D000529 ORTHO05D000472 8.9e-13 78.2 130 35.4
TAR381G0813 Trochodendron aralioides HOM05D000529 ORTHO05D000472 8.9e-13 78.2 126 34.1
Dinv29950 Davidia involucrata HOM05D000529 ORTHO05D000472 1.2e-12 77.8 135 35.6
QL06p043050 Quercus lobata HOM05D000529 ORTHO05D000472 2.0e-12 77.0 103 41.7
Dinv29949 Davidia involucrata HOM05D000529 ORTHO05D000472 4.4e-12 75.9 131 34.4
QL01p034712 Quercus lobata HOM05D000529 ORTHO05D000472 1.3e-11 74.3 116 36.2
Ciclev10018897m.g Citrus clementina HOM05D000529 ORTHO05D000472 1.7e-11 73.9 126 35.7
Dinv39897 Davidia involucrata HOM05D000529 ORTHO05D000472 1.7e-11 73.9 118 34.7
MD15G1278700 Malus domestica HOM05D000046 ORTHO05D025806 2.2e-11 73.6 134 35.1
GSVIVG01007144001 Vitis vinifera HOM05D000529 ORTHO05D000472 3.7e-11 72.8 127 32.3
arahy.Tifrunner.gnm1.ann1.W15MA1 Arachis hypogaea HOM05D000139 ORTHO05D000103 4.9e-11 72.4 126 34.1
FvH4_1g15090 Fragaria vesca HOM05D000529 ORTHO05D000472 4.9e-11 72.4 126 32.5
Prupe.7G139800 Prunus persica HOM05D000529 ORTHO05D000472 4.9e-11 72.4 126 34.9
QL06p043260 Quercus lobata HOM05D000529 ORTHO05D000472 6.4e-11 72.0 130 33.1
RcHm_v2.0_Chr7g0230651 Rosa chinensis HOM05D000529 ORTHO05D010311 6.4e-11 72.0 117 34.2
Haze_15450 Corylus avellana HOM05D000529 ORTHO05D000472 1.1e-10 71.2 126 31.7
PSO210G7782 Papaver somniferum HOM05D000033 ORTHO05D030421 1.1e-10 71.2 126 31.7
arahy.Tifrunner.gnm1.ann1.XFEU61 Arachis hypogaea HOM05D000139 ORTHO05D000103 1.4e-10 70.9 133 33.1
Ciclev10024907m.g Citrus clementina HOM05D000529 ORTHO05D000472 1.4e-10 70.9 128 33.6
AT3G50470 Arabidopsis thaliana HOM05D008738 ORTHO05D010755 2.4e-10 70.1 123 28.5
Thhalv10010714m.g Eutrema salsugineum HOM05D008738 ORTHO05D010755 2.4e-10 70.1 129 30.2
Glyma.17G180300 Glycine max HOM05D000529 ORTHO05D000472 2.4e-10 70.1 133 32.3
QL04p095514 Quercus lobata HOM05D000083 ORTHO05D002708 3.2e-10 69.7 112 38.4
QL06p043275 Quercus lobata HOM05D037871 ORTHO05D010755 3.2e-10 69.7 121 33.1
AL5G30620 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 4.1e-10 69.3 129 27.9
Nn5g29352 Nelumbo nucifera HOM05D000529 ORTHO05D000472 5.4e-10 68.9 127 30.7
CSS0017568 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 7.0e-10 68.6 126 30.2
arahy.Tifrunner.gnm1.ann1.3N9TDM Arachis hypogaea HOM05D000033 ORTHO05D019823 9.2e-10 68.2 133 34.6
arahy.Tifrunner.gnm1.ann1.RP061L Arachis hypogaea HOM05D000033 ORTHO05D038917 9.2e-10 68.2 133 34.6
Carub.0005s1680 Capsella rubella HOM05D008738 ORTHO05D010755 9.2e-10 68.2 123 27.6
DCAR_010928 Daucus carota HOM05D000529 ORTHO05D000472 9.2e-10 68.2 206 26.2
GSVIVG01003569001 Vitis vinifera HOM05D000529 ORTHO05D019823 9.2e-10 68.2 125 31.2
Nn4g24847 Nelumbo nucifera HOM05D000529 ORTHO05D000472 1.2e-09 67.8 136 29.4
QL06p042956 Quercus lobata HOM05D000529 ORTHO05D000472 1.2e-09 67.8 115 35.7
BcaC07g39509 Brassica carinata HOM05D008738 ORTHO05D010755 1.6e-09 67.4 135 28.1
QL03p072768 Quercus lobata HOM05D000529 ORTHO05D000472 1.6e-09 67.4 121 33.9
GSVIVG01003572001 Vitis vinifera HOM05D000529 ORTHO05D000472 1.6e-09 67.4 125 32.0
BcaB01g00613 Brassica carinata HOM05D008738 ORTHO05D010755 2.0e-09 67.0 141 27.7
Prupe.5G127900 Prunus persica HOM05D000529 ORTHO05D012517 2.0e-09 67.0 127 32.3
Prupe.7G139500 Prunus persica HOM05D000529 ORTHO05D000472 2.0e-09 67.0 119 33.6
QL06p043036 Quercus lobata HOM05D000529 ORTHO05D000472 2.7e-09 66.6 115 34.8
Aa31LG4G18690 Aethionema arabicum HOM05D008738 ORTHO05D010755 3.5e-09 66.2 150 26.7
MD02G1164800 Malus domestica HOM05D000529 ORTHO05D000472 3.5e-09 66.2 132 32.6
Prupe.7G138400 Prunus persica HOM05D000046 ORTHO05D025806 3.5e-09 66.2 194 30.9
FAN08G1780 Fragaria x ananassa HOM05D000529 ORTHO05D010311 4.6e-09 65.9 122 32.0
BcaB01g00614 Brassica carinata HOM05D008738 ORTHO05D010755 6.0e-09 65.5 141 27.0
MD02G1165900 Malus domestica HOM05D000529 ORTHO05D010311 6.0e-09 65.5 108 35.2
Medtr8g479430 Medicago truncatula HOM05D000529 ORTHO05D000472 6.0e-09 65.5 138 29.7
RcHm_v2.0_Chr2g0104561 Rosa chinensis HOM05D000046 ORTHO05D025806 6.0e-09 65.5 136 37.5
RcHm_v2.0_Chr7g0230551 Rosa chinensis HOM05D000529 ORTHO05D010311 6.0e-09 65.5 119 32.8
FvH4_1g15120 Fragaria vesca HOM05D000529 ORTHO05D000472 7.8e-09 65.1 126 30.2
FAN26G3207 Fragaria x ananassa HOM05D000529 ORTHO05D000472 7.8e-09 65.1 126 30.2
Prupe.7G138800 Prunus persica HOM05D000529 ORTHO05D000472 7.8e-09 65.1 127 30.7
QL03p072647 Quercus lobata HOM05D000529 ORTHO05D000472 7.8e-09 65.1 121 33.1
RcHm_v2.0_Chr2g0104831 Rosa chinensis HOM05D000083 ORTHO05D002708 7.8e-09 65.1 110 33.6
BolC8t50176H Brassica oleracea HOM05D008738 ORTHO05D010755 1.0e-08 64.7 135 27.4
Cc07_g05700 Coffea canephora HOM05D000529 ORTHO05D000472 1.0e-08 64.7 126 34.1
Manes.12G094100 Manihot esculenta HOM05D000529 ORTHO05D000472 1.3e-08 64.3 137 29.9
FvH4_5g32830 Fragaria vesca HOM05D000529 ORTHO05D010311 1.7e-08 63.9 116 32.8
QL02p078112 Quercus lobata HOM05D000529 ORTHO05D000472 1.7e-08 63.9 117 35.9
QL93p0205_0245 Quercus lobata HOM05D000529 ORTHO05D000472 1.7e-08 63.9 117 35.9
arahy.Tifrunner.gnm1.ann1.AANK3P Arachis hypogaea HOM05D000033 ORTHO05D083727 2.3e-08 63.5 133 33.1
A09p43500 Brassica napus HOM05D008738 ORTHO05D010755 2.3e-08 63.5 141 27.0
MD02G1166100 Malus domestica HOM05D000529 ORTHO05D000472 2.3e-08 63.5 119 31.9
MD06G1115400 Malus domestica HOM05D000529 ORTHO05D025806 2.3e-08 63.5 126 31.0
ATR0767G137 Amborella trichopoda HOM05D000529 ORTHO05D000472 3.0e-08 63.2 133 30.1
CARHR159980 Cardamine hirsuta HOM05D008738 ORTHO05D010755 3.0e-08 63.2 135 27.4
CiPaw.01G024000 Carya illinoinensis HOM05D000529 ORTHO05D000472 3.0e-08 63.2 124 35.5
RcHm_v2.0_Chr2g0104151 Rosa chinensis HOM05D000529 ORTHO05D000472 3.0e-08 63.2 137 29.2
BraA09t39815Z Brassica rapa HOM05D008738 ORTHO05D010755 3.9e-08 62.8 141 27.0
RcHm_v2.0_Chr7g0230541 Rosa chinensis HOM05D000529 ORTHO05D010311 3.9e-08 62.8 122 32.8
FAN23G2692 Fragaria x ananassa HOM05D000529 ORTHO05D000472 5.0e-08 62.4 119 31.1
Thecc.01G050400 Theobroma cacao HOM05D000529 ORTHO05D000472 5.0e-08 62.4 133 30.1
BcaC07g39511 Brassica carinata HOM05D008738 ORTHO05D010755 6.6e-08 62.0 141 26.2
RcHm_v2.0_Chr2g0102961 Rosa chinensis HOM05D000046 ORTHO05D020739 6.6e-08 62.0 124 32.3
RcHm_v2.0_Chr2g0104171 Rosa chinensis HOM05D000529 ORTHO05D000472 6.6e-08 62.0 126 27.8
CARHR159990 Cardamine hirsuta HOM05D008738 ORTHO05D010755 8.6e-08 61.6 152 25.7
CiPaw.01G024500 Carya illinoinensis HOM05D000529 ORTHO05D000472 8.6e-08 61.6 138 32.6
FAN28G0855 Fragaria x ananassa HOM05D000529 ORTHO05D000472 8.6e-08 61.6 119 31.1
MD02G1021700 Malus domestica HOM05D000041 ORTHO05D001532 8.6e-08 61.6 126 31.7
Medtr8g479450 Medicago truncatula HOM05D000529 ORTHO05D000472 8.6e-08 61.6 117 30.8
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 1.1e-07 61.2 134 35.1
CiPaw.01G025000 Carya illinoinensis HOM05D000529 ORTHO05D000472 1.1e-07 61.2 138 32.6
Dinv19756 Davidia involucrata HOM05D003049 ORTHO05D003531 1.1e-07 61.2 99 37.4
MD02G1165300 Malus domestica HOM05D000529 ORTHO05D000472 1.1e-07 61.2 132 31.1
MD02G1166300 Malus domestica HOM05D000529 ORTHO05D000472 1.1e-07 61.2 121 29.8
PSO063G0020 Papaver somniferum HOM05D000033 ORTHO05D304601 1.1e-07 61.2 134 28.4
FAN18G1950 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.9e-07 60.5 110 32.7
MD02G1165600 Malus domestica HOM05D000529 ORTHO05D000472 1.9e-07 60.5 119 29.4
A03p47800 Brassica napus HOM05D008738 ORTHO05D010755 2.5e-07 60.1 122 32.8
BraA03t13890Z Brassica rapa HOM05D008738 ORTHO05D010755 2.5e-07 60.1 122 32.8
Glyma.01G133100 Glycine max HOM05D000529 ORTHO05D019823 2.5e-07 60.1 135 31.1
MD02G1164700 Malus domestica HOM05D000529 ORTHO05D000472 2.5e-07 60.1 104 30.8
Prupe.7G139200 Prunus persica HOM05D000529 ORTHO05D000472 2.5e-07 60.1 119 30.3
FAN04G0459 Fragaria x ananassa HOM05D000529 ORTHO05D010311 3.3e-07 59.7 137 31.4
FAN08G3343 Fragaria x ananassa HOM05D000529 ORTHO05D010311 3.3e-07 59.7 115 32.2
Phvul.003G247601 Phaseolus vulgaris HOM05D000529 ORTHO05D000472 3.3e-07 59.7 142 28.2
RcHm_v2.0_Chr2g0104731 Rosa chinensis HOM05D000577 ORTHO05D003509 3.3e-07 59.7 120 31.7
arahy.Tifrunner.gnm1.ann1.50YJF0 Arachis hypogaea HOM05D000033 ORTHO05D085538 4.3e-07 59.3 133 31.6
A09p43510 Brassica napus HOM05D008738 ORTHO05D010755 4.3e-07 59.3 139 27.3
MD06G1115200 Malus domestica HOM05D000081 ORTHO05D000036 4.3e-07 59.3 126 31.7
RcHm_v2.0_Chr7g0230701 Rosa chinensis HOM05D000529 ORTHO05D010311 4.3e-07 59.3 105 31.4
vmacro17918 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 4.3e-07 59.3 126 32.5
HanXRQChr11g0331571 Helianthus annuus HOM05D000529 ORTHO05D000472 5.6e-07 58.9 135 28.1
Sabra07G0034600 Salix brachista HOM05D037871 ORTHO05D010755 5.6e-07 58.9 132 31.8
FvH4_1g15220 Fragaria vesca HOM05D000529 ORTHO05D000472 7.3e-07 58.5 119 30.3
MD00G1053700 Malus domestica HOM05D000529 ORTHO05D000472 7.3e-07 58.5 87 37.9
MD02G1022000 Malus domestica HOM05D008495 ORTHO05D025806 7.3e-07 58.5 119 30.3
PGR102G1711 Punica granatum HOM05D000529 ORTHO05D000472 7.3e-07 58.5 237 24.1
RhsimUnG0071100 Rhododendron simsii HOM05D000529 ORTHO05D000472 7.3e-07 58.5 126 30.2
THA.LOC104819226 Tarenaya hassleriana HOM05D000529 ORTHO05D000472 7.3e-07 58.5 135 26.7
FvH4_5g11120 Fragaria vesca HOM05D000248 ORTHO05D017958 9.5e-07 58.2 121 33.1
FvH4_5g11230 Fragaria vesca HOM05D000248 ORTHO05D017958 9.5e-07 58.2 121 33.1
FvH4_5g32820 Fragaria vesca HOM05D000529 ORTHO05D010311 9.5e-07 58.2 115 33.0
FAN18G1889 Fragaria x ananassa HOM05D000529 ORTHO05D010311 9.5e-07 58.2 137 31.4
FAN19G2597 Fragaria x ananassa HOM05D000529 ORTHO05D000472 9.5e-07 58.2 119 30.3
QL06p043250 Quercus lobata HOM05D000529 ORTHO05D000472 9.5e-07 58.2 121 32.2
AL5G30600 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 1.2e-06 57.8 123 27.6
AL5G30610 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 1.2e-06 57.8 129 24.0
BraA09t39816Z Brassica rapa HOM05D008738 ORTHO05D010755 1.2e-06 57.8 141 25.5
FvH4_1g15170 Fragaria vesca HOM05D000529 ORTHO05D000472 1.6e-06 57.4 126 29.4
RcHm_v2.0_Chr2g0104381 Rosa chinensis HOM05D000529 ORTHO05D000472 1.6e-06 57.4 105 30.5
FAN18G0985 Fragaria x ananassa HOM05D008495 ORTHO05D022638 2.1e-06 57.0 97 30.9
MD06G1116000 Malus domestica HOM05D000054 ORTHO05D000286 2.1e-06 57.0 105 32.4
AT3G50460 Arabidopsis thaliana HOM05D008738 ORTHO05D010755 2.8e-06 56.6 129 23.3
Prupe.7G139600 Prunus persica HOM05D000529 ORTHO05D000472 2.8e-06 56.6 126 31.0
FAN02G4337 Fragaria x ananassa HOM05D000529 ORTHO05D010311 3.6e-06 56.2 129 24.8
A09p43530 Brassica napus HOM05D008738 ORTHO05D010755 4.7e-06 55.8 141 25.5
Carub.0005s1679 Capsella rubella HOM05D008738 ORTHO05D010755 4.7e-06 55.8 129 24.8
FvH4_5g03520 Fragaria vesca HOM05D008495 ORTHO05D022638 4.7e-06 55.8 97 29.9
FAN23G1659 Fragaria x ananassa HOM05D000891 ORTHO05D000761 4.7e-06 55.8 106 34.0
FAN28G0376 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.7e-06 55.8 119 27.7
FAN28G1580 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.7e-06 55.8 119 27.7
TWI09G1247 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 4.7e-06 55.8 135 25.9
BraA09t39817Z Brassica rapa HOM05D008738 ORTHO05D010755 6.2e-06 55.5 149 23.5
FvH4_1g15160 Fragaria vesca HOM05D000529 ORTHO05D000472 6.2e-06 55.5 119 27.7
RcHm_v2.0_Chr2g0104121 Rosa chinensis HOM05D000529 ORTHO05D000472 6.2e-06 55.5 126 29.4
BcaC06g33094 Brassica carinata HOM05D008738 ORTHO05D010755 8.1e-06 55.1 143 25.9
FAN19G2554 Fragaria x ananassa HOM05D000529 ORTHO05D000472 8.1e-06 55.1 119 27.7
Prupe.7G139700 Prunus persica HOM05D000529 ORTHO05D000472 8.1e-06 55.1 134 31.3
vmacro17917 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 8.1e-06 55.1 128 29.7


User provided reference genes

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