Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G009300 Carya illinoinensis HOM05D007434 ORTHO05D009541 1.7e-54 215.7 104 100.0
QL06p042177 Quercus lobata HOM05D007434 ORTHO05D009541 3.1e-24 115.2 96 62.5
CiPaw.01G021200 Carya illinoinensis HOM05D007434 ORTHO05D009541 4.2e-21 104.8 94 59.6
Haze_15425 Corylus avellana HOM05D007434 ORTHO05D009541 2.2e-17 92.4 74 66.2
FvH4_1g15740 Fragaria vesca HOM05D007434 ORTHO05D009541 2.0e-15 85.9 106 48.1
FAN23G2206 Fragaria x ananassa HOM05D007434 ORTHO05D009541 5.9e-15 84.3 102 47.1
FAN28G0198 Fragaria x ananassa HOM05D007434 ORTHO05D009541 1.0e-14 83.6 101 47.5
Prupe.7G136000 Prunus persica HOM05D007434 ORTHO05D009541 1.3e-14 83.2 106 47.2
Ciclev10027106m.g Citrus clementina HOM05D007434 ORTHO05D009541 3.8e-14 81.6 93 52.7
Potri.007G041500 Populus trichocarpa HOM05D007434 ORTHO05D009541 8.5e-14 80.5 97 44.3
Atru.chr3.392 Acer truncatum HOM05D007434 ORTHO05D009541 5.5e-13 77.8 96 47.9
ClCG01G016730 Citrullus lanatus HOM05D007434 ORTHO05D009541 1.6e-12 76.3 90 44.4
CsaV3_6G043150 Cucumis sativus L. HOM05D007434 ORTHO05D009541 2.7e-12 75.5 89 46.1
Manes.13G126300 Manihot esculenta HOM05D007434 ORTHO05D009541 3.6e-12 75.1 92 43.5
Sed0015330 Sechium edule HOM05D007434 ORTHO05D009541 3.6e-12 75.1 98 43.9
Glyma.11G057300 Glycine max HOM05D007434 ORTHO05D009541 1.0e-11 73.6 94 44.7
MELO3C007552.2 Cucumis melo HOM05D007434 ORTHO05D009541 1.8e-11 72.8 89 46.1
Atru.chr3.394 Acer truncatum HOM05D007434 ORTHO05D009541 3.0e-11 72.0 93 47.3
Sed0003827 Sechium edule HOM05D007434 ORTHO05D009541 2.0e-10 69.3 91 45.1
Ciclev10027212m.g Citrus clementina HOM05D007434 ORTHO05D009541 2.5e-10 68.9 103 38.8
COL.COLO4_11385 Corchorus olitorius HOM05D007434 ORTHO05D009541 2.5e-10 68.9 93 39.8
Nn5g30204 Nelumbo nucifera HOM05D007434 ORTHO05D009541 2.5e-10 68.9 92 39.1
Dinv29971 Davidia involucrata HOM05D008581 ORTHO05D009541 3.3e-10 68.6 64 56.2
Glyma.01G184900 Glycine max HOM05D007434 ORTHO05D009541 3.3e-10 68.6 94 43.6
Lj2g0026149 Lotus japonicus HOM05D007434 ORTHO05D009541 5.7e-10 67.8 94 44.7
Medtr5g017710 Medicago truncatula HOM05D007434 ORTHO05D009541 5.7e-10 67.8 94 42.6
Oeu050758.1 Olea europaea HOM05D007434 ORTHO05D009541 1.3e-09 66.6 91 39.6
Atru.chr3.391 Acer truncatum HOM05D007434 ORTHO05D009541 2.2e-09 65.9 98 43.9
MD15G1281800 Malus domestica HOM05D007434 ORTHO05D009541 2.8e-09 65.5 90 41.1
CANSAT01G1652 Cannabis sativa HOM05D007434 ORTHO05D009541 6.3e-09 64.3 93 35.5
Potri.007G041400 Populus trichocarpa HOM05D007434 ORTHO05D009541 6.3e-09 64.3 98 35.7
Lj4g0021906 Lotus japonicus HOM05D007434 ORTHO05D009541 8.2e-09 63.9 93 38.7
Phvul.002G020200 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 2.4e-08 62.4 96 38.5
Sc03g0001440 Simmondsia chinensis HOM05D012520 ORTHO05D013638 2.4e-08 62.4 91 37.4
TPR.G21269 Trifolium pratense HOM05D007434 ORTHO05D009541 2.4e-08 62.4 91 41.8
CiPaw.01G021300 Carya illinoinensis HOM05D007434 ORTHO05D009541 3.1e-08 62.0 96 37.5
arahy.Tifrunner.gnm1.ann1.T0173K Arachis hypogaea HOM05D007434 ORTHO05D009541 6.9e-08 60.8 96 40.6
Manes.13G126400 Manihot esculenta HOM05D007434 ORTHO05D009541 6.9e-08 60.8 94 40.4
Lalb_Chr05g0213231 Lupinus albus HOM05D007434 ORTHO05D009541 9.1e-08 60.5 100 41.0
Lalb_Chr09g0333721 Lupinus albus HOM05D007434 ORTHO05D009541 9.1e-08 60.5 95 41.1
FAN28G0171 Fragaria x ananassa HOM05D007434 ORTHO05D009541 1.2e-07 60.1 96 34.4
Manes.12G100300 Manihot esculenta HOM05D007434 ORTHO05D009541 1.5e-07 59.7 99 40.4
FAN26G1295 Fragaria x ananassa HOM05D007434 ORTHO05D019139 2.0e-07 59.3 102 32.4
Lalb_Chr05g0226641 Lupinus albus HOM05D007434 ORTHO05D009541 2.0e-07 59.3 94 36.2
Sabra07G0037300 Salix brachista HOM05D008581 ORTHO05D009966 2.0e-07 59.3 113 34.5
Nn1g05850 Nelumbo nucifera HOM05D007434 ORTHO05D009541 2.6e-07 58.9 96 36.5
COL.COLO4_11386 Corchorus olitorius HOM05D007434 ORTHO05D009541 3.4e-07 58.5 92 42.4
Lalb_Chr09g0323081 Lupinus albus HOM05D007434 ORTHO05D009541 3.4e-07 58.5 94 39.4
Manes.12G100200 Manihot esculenta HOM05D007434 ORTHO05D009541 3.4e-07 58.5 90 40.0
Thecc.01G053200 Theobroma cacao HOM05D007434 ORTHO05D009541 3.4e-07 58.5 94 39.4
Actinidia12058 Actinidia chinensis HOM05D007434 ORTHO05D009541 5.9e-07 57.8 62 46.8
TPR.G19007 Trifolium pratense HOM05D007434 ORTHO05D009541 5.9e-07 57.8 94 37.2
Nn1g05851 Nelumbo nucifera HOM05D007434 ORTHO05D009541 7.7e-07 57.4 93 37.6
Atru.chr3.395 Acer truncatum HOM05D007434 ORTHO05D013638 1.0e-06 57.0 94 35.1
Gohir.D11G197450 Gossypium hirsutum HOM05D007434 ORTHO05D009541 1.0e-06 57.0 91 41.8
Lj2g0001941 Lotus japonicus HOM05D007434 ORTHO05D009541 1.3e-06 56.6 95 35.8
Prupe.7G136100 Prunus persica HOM05D007434 ORTHO05D013638 1.3e-06 56.6 104 31.7
Glyma.17G176700 Glycine max HOM05D007434 ORTHO05D009541 1.7e-06 56.2 89 39.3
DCAR_010906 Daucus carota HOM05D007434 ORTHO05D009541 2.2e-06 55.8 89 40.4
QL06p042201 Quercus lobata HOM05D007434 ORTHO05D009541 2.9e-06 55.5 97 34.0
Aqoxy6G01381 Aquilegia oxysepala HOM05D007434 ORTHO05D009541 3.8e-06 55.1 84 38.1
Phvul.003G245500 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 3.8e-06 55.1 93 33.3
Potri.007G042000 Populus trichocarpa HOM05D008581 ORTHO05D009966 5.0e-06 54.7 112 33.9
Aqoxy6G01382 Aquilegia oxysepala HOM05D007434 ORTHO05D009541 8.5e-06 53.9 94 31.9
Gohir.A02G159900 Gossypium hirsutum HOM05D007434 ORTHO05D009541 8.5e-06 53.9 91 41.8
Gohir.A11G190650 Gossypium hirsutum HOM05D007434 ORTHO05D009541 8.5e-06 53.9 90 41.1
Gohir.D03G020700 Gossypium hirsutum HOM05D007434 ORTHO05D009541 8.5e-06 53.9 91 41.8
Manes.12G100000 Manihot esculenta HOM05D008581 ORTHO05D009966 8.5e-06 53.9 118 33.9


User provided reference genes

Program Settings