Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.5e-175 619.4 317 100.0
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.4e-131 473.4 319 76.2
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 3.2e-120 435.6 352 65.3
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 2.0e-119 433.0 274 78.5
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 1.1e-117 427.2 278 76.3
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.1e-112 410.6 327 64.2
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 7.1e-112 407.9 323 64.4
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.2e-111 407.1 319 64.9
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 7.8e-111 404.4 321 64.8
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.0e-110 404.1 267 70.8
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 2.1e-108 396.4 328 61.0
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 6.2e-108 394.8 299 65.9
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.1e-107 394.0 318 62.3
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 1.1e-107 394.0 268 71.6
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.4e-107 393.7 305 64.3
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.4e-107 393.7 312 64.1
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 3.1e-107 392.5 305 62.6
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.6e-106 389.4 302 64.2
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 4.4e-106 388.7 321 61.4
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.4e-106 388.7 320 62.8
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.3e-105 387.1 319 64.9
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.3e-105 387.1 319 64.9
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.7e-105 386.7 277 69.0
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 8.4e-105 384.4 310 58.4
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 8.4e-105 384.4 312 63.5
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 1.2e-103 380.6 308 59.7
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.6e-103 380.2 271 68.6
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.6e-103 380.2 302 62.6
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 2.1e-103 379.8 308 59.7
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 2.3e-102 376.3 298 59.7
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 3.0e-102 375.9 321 61.4
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 3.0e-102 375.9 287 62.0
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 6.6e-102 374.8 315 62.9
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.1e-101 374.0 288 66.3
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.9e-101 373.2 317 59.3
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 4.3e-101 372.1 314 60.8
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 7.3e-101 371.3 325 61.8
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 4.7e-100 368.6 265 67.5
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 6.2e-100 368.2 314 61.8
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.1e-99 367.5 314 61.8
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 1.4e-99 367.1 286 62.2
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 1.2e-98 364.0 303 59.4
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 2.6e-98 362.8 281 59.4
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 2.6e-98 362.8 321 57.6
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 3.4e-98 362.5 273 64.1
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 9.9e-98 360.9 295 64.4
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 2.9e-97 359.4 274 63.1
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 2.9e-97 359.4 303 56.8
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.1e-96 357.5 304 59.5
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.1e-96 357.5 315 60.6
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.9e-96 356.7 313 57.5
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.9e-96 356.7 315 58.1
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.4e-96 356.3 317 55.8
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 3.2e-96 355.9 308 58.1
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 3.2e-96 355.9 309 57.9
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 4.2e-96 355.5 306 57.5
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 4.2e-96 355.5 317 58.0
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 4.2e-96 355.5 277 62.5
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 5.4e-96 355.1 290 62.1
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 5.4e-96 355.1 271 63.5
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.2e-95 354.0 317 56.8
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 2.7e-95 352.8 313 56.9
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.0e-94 350.9 314 55.7
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 5.1e-94 348.6 315 56.8
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 1.5e-93 347.1 294 58.2
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.5e-93 347.1 304 58.9
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 2.5e-93 346.3 298 60.1
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 7.3e-93 344.7 298 56.4
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 2.1e-92 343.2 296 59.1
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.6e-92 342.4 329 57.1
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 8.1e-92 341.3 279 58.4
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 4.0e-91 339.0 271 60.5
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 5.3e-91 338.6 271 60.5
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.2e-90 337.4 310 59.0
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.0e-90 336.7 314 53.2
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.6e-90 336.3 302 56.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 8.4e-89 331.3 280 57.9
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 8.4e-89 331.3 285 59.3
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 6.0e-87 325.1 326 53.7
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 7.9e-87 324.7 309 53.7
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.0e-86 324.3 312 54.2
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 8.7e-86 321.2 311 53.7
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.3e-85 318.9 292 55.1
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 7.4e-85 318.2 308 51.0
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 9.6e-85 317.8 304 53.0
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 9.6e-85 317.8 320 51.6
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.6e-84 317.0 318 52.2
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.8e-84 316.2 306 53.9
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.2e-84 315.1 321 51.7
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.1e-83 314.3 262 58.8
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 3.1e-83 312.8 319 51.4
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 5.3e-83 312.0 306 51.3
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 2.0e-82 310.1 311 52.1
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 5.8e-82 308.5 360 48.3
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 7.6e-82 308.1 317 50.5
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 2.2e-81 306.6 268 54.5
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.1e-80 304.3 295 51.9
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.2e-80 302.8 317 50.5
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 5.5e-80 302.0 251 63.7
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.8e-78 297.0 307 50.2
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.1e-77 294.3 269 53.9
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.6e-76 290.4 290 49.0
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 3.7e-76 289.3 292 50.3
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 4.8e-76 288.9 276 51.8
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.5e-74 283.9 306 51.0
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 5.8e-74 282.0 310 46.8
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 8.4e-73 278.1 280 48.2
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 8.4e-73 278.1 325 46.5
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.1e-72 277.7 204 63.2
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.4e-72 277.3 270 52.2
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 4.6e-71 272.3 267 49.1
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.0e-71 271.9 203 67.5
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.0e-71 271.9 203 67.5
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 7.9e-71 271.6 308 45.1
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.3e-70 270.0 305 46.6
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 2.5e-69 266.5 198 69.2
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 5.7e-69 265.4 289 45.7
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.1e-68 263.5 267 49.8
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 5.9e-66 255.4 260 49.2
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 7.6e-66 255.0 311 47.3
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 8.5e-65 251.5 291 45.4
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 1.1e-61 241.1 175 67.4
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.1e-61 241.1 260 47.3
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 9.7e-61 238.0 300 42.7
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.8e-59 233.8 235 49.4
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 6.5e-57 225.3 312 41.0
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 1.4e-56 224.2 302 42.7
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.2e-56 222.6 344 40.4
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 4.4e-53 212.6 172 59.9
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 8.2e-52 208.4 309 38.8
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.1e-51 208.0 178 57.9
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.0e-49 201.4 261 41.0
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.3e-46 190.3 259 39.8
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.3e-46 190.3 272 36.4
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 3.0e-46 189.9 262 37.4
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.7e-44 184.1 260 37.7
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.5e-32 143.7 209 40.7
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 5.2e-30 136.0 95 69.5
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.5e-25 119.0 108 58.3
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.5e-25 119.0 108 58.3
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.4e-21 106.7 202 33.2
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 2.8e-20 103.6 72 61.1
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 4.9e-20 102.8 121 41.3
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 9.2e-19 98.6 101 46.5
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.7e-17 94.4 129 38.0
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 2.5e-16 90.5 95 44.2
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 1.8e-11 74.3 228 25.9
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 5.9e-10 69.3 261 24.1
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 9.5e-08 62.0 238 23.9


User provided reference genes

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