Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 4.7e-192 674.5 371 100.0
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 3.6e-91 339.3 373 59.0
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 2.3e-90 336.7 376 56.4
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 5.8e-89 332.0 373 60.1
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 1.9e-84 317.0 375 58.4
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.5e-57 227.6 392 43.9
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.0e-54 215.7 352 45.2
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 6.7e-53 212.2 397 45.6
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 8.7e-53 211.8 353 44.5
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.5e-52 210.3 353 45.0
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.8e-51 206.8 391 44.2
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 2.0e-49 200.7 382 39.8
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 3.8e-48 196.4 370 41.1
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 8.4e-48 195.3 396 42.4
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 5.5e-47 192.6 369 42.0
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 7.1e-47 192.2 385 41.6
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 9.3e-47 191.8 404 39.1
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 1.6e-46 191.0 389 39.3
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 1.6e-46 191.0 382 42.7
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 1.3e-45 188.0 351 45.3
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 3.0e-45 186.8 375 39.2
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 5.1e-45 186.0 369 43.1
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 3.3e-44 183.3 374 42.5
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 1.7e-40 171.0 329 43.8
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 1.7e-40 171.0 329 43.8
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 2.9e-40 170.2 369 39.3
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 4.6e-38 162.9 371 40.7
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 3.0e-37 160.2 347 44.4
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.9e-37 159.8 389 40.9
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.3e-36 156.8 364 37.1
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 5.7e-36 156.0 368 40.8
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 1.6e-35 154.5 356 40.7
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 1.6e-35 154.5 366 41.3
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.4e-34 151.4 345 40.9
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 2.4e-34 150.6 344 39.2
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.1e-34 150.2 362 38.7
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.0e-34 148.7 362 38.4
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 9.0e-34 148.7 349 37.5
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.2e-33 148.3 382 38.5
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.2e-33 148.3 348 40.5
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.4e-33 146.7 361 35.7
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 3.4e-33 146.7 341 37.5
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 3.4e-33 146.7 353 43.1
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 4.5e-33 146.4 353 41.9
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 1.0e-32 145.2 349 42.7
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 5.0e-32 142.9 386 39.1
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 1.4e-31 141.4 354 38.4
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 4.2e-31 139.8 378 38.1
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 9.3e-31 138.7 343 37.3
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 4.6e-30 136.3 374 36.1
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.8e-29 134.4 373 36.2
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.0e-29 133.7 393 37.9
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 3.9e-29 133.3 361 37.7
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 3.9e-29 133.3 393 37.9
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 3.9e-29 133.3 375 36.8
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.1e-29 132.9 393 37.9
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.1e-28 131.7 362 35.9
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.9e-28 131.0 378 39.4
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 1.9e-28 131.0 380 34.7
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 1.6e-27 127.9 396 34.3
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 3.7e-27 126.7 344 34.0
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 3.7e-27 126.7 376 35.9
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 4.8e-27 126.3 353 32.6
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 6.3e-27 125.9 373 37.5
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 8.2e-27 125.6 355 34.4
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 1.8e-26 124.4 381 34.4
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.8e-26 124.4 355 33.8
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 4.5e-25 119.8 394 35.5
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 1.0e-24 118.6 379 33.0
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 2.2e-24 117.5 375 30.4
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 2.2e-24 117.5 336 34.2
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 3.8e-24 116.7 368 36.7
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 8.5e-24 115.5 202 43.1
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 8.5e-24 115.5 324 34.9
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 1.4e-23 114.8 324 32.4
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.5e-23 114.0 341 31.1
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 1.2e-22 111.7 341 33.7
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.6e-22 111.3 340 30.6
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 2.7e-22 110.5 368 34.5
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.6e-22 110.2 337 31.2
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 1.8e-21 107.8 377 36.3
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 1.8e-21 107.8 396 34.6
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 1.1e-20 105.1 207 37.7
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 2.6e-20 104.0 391 36.3
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 7.4e-20 102.4 377 33.2
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 7.4e-20 102.4 371 35.8
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 9.7e-20 102.1 357 37.0
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 1.3e-19 101.7 373 31.6
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 3.7e-19 100.1 377 30.2
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.1e-18 97.1 390 34.9
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 5.3e-18 96.3 319 36.7
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 4.5e-17 93.2 358 28.5
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 1.7e-16 91.3 373 28.7
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 8.5e-16 89.0 356 30.6
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 1.1e-15 88.6 405 33.1
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 7.2e-15 85.9 394 31.2
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 9.4e-15 85.5 347 31.1
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 7.9e-14 82.4 354 33.3
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 7.9e-14 82.4 254 31.5
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 3.0e-13 80.5 242 32.2
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 2.6e-12 77.4 227 33.0
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 3.3e-12 77.0 149 36.2
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 4.4e-12 76.6 287 27.2
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 5.7e-12 76.3 188 36.2
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 2.8e-11 73.9 253 36.4
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 8.2e-11 72.4 362 26.8
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 8.2e-11 72.4 362 26.8
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 8.2e-11 72.4 362 26.8
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 8.2e-11 72.4 288 29.9
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 2.4e-10 70.9 219 35.2
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 2.4e-10 70.9 224 32.6
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 2.4e-10 70.9 206 33.5
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 3.1e-10 70.5 344 27.0
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 5.3e-10 69.7 224 32.6
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 5.3e-10 69.7 211 30.8
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 7.0e-10 69.3 207 33.8
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 3.5e-09 67.0 351 31.6
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 3.5e-09 67.0 353 29.7
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 4.5e-09 66.6 346 28.6
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 5.9e-09 66.2 221 30.8
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 7.7e-09 65.9 124 41.9
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 1.0e-08 65.5 230 31.3
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 1.0e-08 65.5 203 33.5
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 1.0e-08 65.5 203 33.5
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 3.8e-08 63.5 305 30.2
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 1.5e-07 61.6 354 26.8
CDE01G0807 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 1.9e-07 61.2 368 27.7
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 2.5e-07 60.8 330 30.3
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 4.2e-07 60.1 352 27.6
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 4.2e-07 60.1 352 30.7
CDE02G0512 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 2.1e-06 57.8 389 26.2
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 3.6e-06 57.0 259 33.2


User provided reference genes

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